View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_6 (Length: 313)
Name: NF3086_low_6
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 33879559 - 33879836
Alignment:
| Q |
16 |
gaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacgacacctgaaaagattccctaacctcaataaccgtcgaagaattgt |
115 |
Q |
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| T |
33879559 |
gaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacgacacctgaaaagactccctaacctcaataaccgtcgaagaattgt |
33879658 |
T |
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| Q |
116 |
cggtgttgctgctgctgctgtccatggtgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcc |
215 |
Q |
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| T |
33879659 |
cgcggttgct---gctgctgtccatggtgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcc |
33879755 |
T |
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| Q |
216 |
tcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgt |
296 |
Q |
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| T |
33879756 |
tcgttcacgaaagtgttccttaacaaatacttcaaaattctttggcggtgtccgaatgatcaaatatgcagcgtgacacgt |
33879836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 16665961 - 16665832
Alignment:
| Q |
143 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
242 |
Q |
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|||||||| ||||||||||||| ||| | | |||||||| |||||| |||| ||||| ||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
16665961 |
tgttgtaattataatacccaaccatcaagcgtccattcacatactctctacatgcagcaagaagaacatgacctctttcacgaaagtgttccttcacaaa |
16665862 |
T |
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| Q |
243 |
tacttcaaaattctttggcggtgtccgaat |
272 |
Q |
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| T |
16665861 |
aacctcaaaattcttaggtggtttccgaat |
16665832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 17640331 - 17640202
Alignment:
| Q |
143 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
242 |
Q |
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|||||||| ||||||||||||| ||| | | |||||||| |||||| |||| ||||| ||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
17640331 |
tgttgtaattataatacccaaccatcaagcgtccattcacatactctctacatgcagcaagaagaacatgacctctttcacgaaagtgttccttcacaaa |
17640232 |
T |
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| Q |
243 |
tacttcaaaattctttggcggtgtccgaat |
272 |
Q |
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| T |
17640231 |
aacctcaaaattcttaggtggtttccgaat |
17640202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 16684363 - 16684234
Alignment:
| Q |
143 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
242 |
Q |
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|||||||| ||||||||||||| |||| | |||||||| |||||| |||| ||||| ||||| ||||| |||| |||||||||||||||||| ||||| |
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| T |
16684363 |
tgttgtaattataatacccaaccatcacacgtccattcacatactctctacatgcagcaagaagtacatgacctctttcacgaaagtgttccttcacaaa |
16684264 |
T |
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| Q |
243 |
tacttcaaaattctttggcggtgtccgaat |
272 |
Q |
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| ||||||||||| || ||| ||||||| |
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| T |
16684263 |
atcctcaaaattcttaggtggtttccgaat |
16684234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 17658599 - 17658470
Alignment:
| Q |
143 |
tgttgtaaccataatacccaaccctcacgtgcccattcacgtactctttacacgcagcgagaagaacatgtcctcgttcacgaaagtgttccttaacaaa |
242 |
Q |
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|||||||| ||||||||||||| |||| | |||||||| |||||| |||| ||||| ||||| ||||| |||| |||||||||||||||||| ||||| |
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| T |
17658599 |
tgttgtaattataatacccaaccatcacacgtccattcacatactctctacatgcagcaagaagtacatgacctctttcacgaaagtgttccttcacaaa |
17658500 |
T |
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| Q |
243 |
tacttcaaaattctttggcggtgtccgaat |
272 |
Q |
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| T |
17658499 |
atcctcaaaattcttaggtggtttccgaat |
17658470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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