View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3086_low_7 (Length: 249)
Name: NF3086_low_7
Description: NF3086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3086_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 30313324 - 30313533
Alignment:
| Q |
31 |
ttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgt |
130 |
Q |
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| T |
30313324 |
ttatacaaaagaatgtccaggttcatcaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaattttgt |
30313423 |
T |
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| Q |
131 |
tcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaattttatggctataaata |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30313424 |
tcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaattttatagctataaata |
30313523 |
T |
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| Q |
231 |
gtaccctttg |
240 |
Q |
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|||||||||| |
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| T |
30313524 |
gtaccctttg |
30313533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 30284805 - 30285025
Alignment:
| Q |
19 |
ataaggcaccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgcca |
118 |
Q |
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|||||| | ||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||||||| |
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| T |
30284805 |
ataaggtatcccttttccaaaagcatgtccaggttcattaaattcaaacaaaaatccaccaccataagttcagtaccacggtttcttttcatttttgcca |
30284904 |
T |
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| Q |
119 |
actcaattttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaatttta |
218 |
Q |
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| T |
30284905 |
actcaattgtgttcatttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgtaatcaatcatataactttcatttcaaacttta |
30285004 |
T |
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| Q |
219 |
tggctataaatagtacccttt |
239 |
Q |
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| T |
30285005 |
tagctataaatagtacccttt |
30285025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 30289784 - 30289939
Alignment:
| Q |
27 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
126 |
Q |
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|||||||| |||||||||||| |||||||| |||||||||||||||||||||||| | ||||| || | |||| | |||||||||||||||||||||| |
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| T |
30289784 |
ccccttatacaaaagaatgtctaggttcatcaaattcaaacaaaactccaccaacc-aggttcagaaccatggttccatttcatttttgccaactcaatt |
30289882 |
T |
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| Q |
127 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgca |
183 |
Q |
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| T |
30289883 |
ttgttcatttcaacacacgtcaaaatgcatgtcacaccatggccaaatgttggtgca |
30289939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 30297278 - 30297436
Alignment:
| Q |
27 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
126 |
Q |
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||||| |||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||| || | |||| ||||||||||| |||| ||||||| |
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| T |
30297278 |
cccctcatccaaaataatgtccaggttcatcaaattcaaacaaaactccaccacca-aagttcagaaccatggttccttttcattttcgccacctcaatt |
30297376 |
T |
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| Q |
127 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgcatgt |
186 |
Q |
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| T |
30297377 |
ttgttcctttcaacacacgtcaaaatgcatgccacaaaatggccaaatgtttgtgcatgt |
30297436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 30302481 - 30302622
Alignment:
| Q |
27 |
ccccttatccaaaagaatgtccaggttcattaaattcaaacaaaactccaccaacttaagttcaatactacggtttcttttcatttttgccaactcaatt |
126 |
Q |
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||||| || ||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||| | |||| ||| ||||||| |
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| T |
30302481 |
cccctcatacaaaagaatgtccaggttcatcaaattcaaacaaaactccacc-acccaagttcagtaccatggtt--------------ccacctcaatt |
30302565 |
T |
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| Q |
127 |
ttgttcctttcaacacacgtcaaaatgcatgtcacgccatggccaaatgttcgtgca |
183 |
Q |
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||| || |||||||||||||||||||||||||| | |||| |||||||||| ||||| |
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| T |
30302566 |
ttgatcatttcaacacacgtcaaaatgcatgtctcaccatagccaaatgttggtgca |
30302622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 46807603 - 46807647
Alignment:
| Q |
38 |
aaagaatgtccaggttcattaaattcaaacaaaactccaccaact |
82 |
Q |
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| T |
46807603 |
aaagaatgtccaggttcatcaaattaaaacaaaacttcacaaact |
46807647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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