View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_high_3 (Length: 339)
Name: NF3088_high_3
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 40999882 - 40999576
Alignment:
| Q |
17 |
aaatatggtacctgtgctaccatccgttggattaggggaccactgtccattgcatttgggtattcaataaattttgttcttaacccaaattgctcttctc |
116 |
Q |
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| T |
40999882 |
aaatatggtacctgtgctacaatccgttggattaggggaccactgtccattgcatttgggtattcaataaattttgttcttaacccaaattgttcttctc |
40999783 |
T |
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| Q |
117 |
catactcattctgtttgggattttgcaatggtttctttatcatttgagaaggcaacacaacagattgaaagtgatctagtgctttggaaattttgttgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999782 |
catactcattctgtttgggattttgcaatggtttctttatcatttgagaaggcaacacaacagattgaaagtgatctagtgctttggaaattttgttgaa |
40999683 |
T |
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| Q |
217 |
ttaaattctaatgcaagttttctcctttaatggagtcaaatttcttttgtggtccactcactagttacgtgttttcgaatgattttatataaagtattca |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40999682 |
ttaaattctaatgcaagttttctcctttgatggagtcaaatttcttttgtggtccactcactagttacgtgttttcgaatgattttatataaagtattca |
40999583 |
T |
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| Q |
317 |
tttattt |
323 |
Q |
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||||||| |
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| T |
40999582 |
tttattt |
40999576 |
T |
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