View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_high_5 (Length: 271)
Name: NF3088_high_5
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 37005068 - 37004829
Alignment:
| Q |
13 |
aatatgtccaggtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaattctttgcctgcatgaagtttactatat |
112 |
Q |
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| T |
37005068 |
aatatgtccaggtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaactctttgcctgcatgaagtttactatat |
37004969 |
T |
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| Q |
113 |
gctttagaactactacatgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatatta |
212 |
Q |
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| T |
37004968 |
gttttagaactactaattgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatatta |
37004869 |
T |
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| Q |
213 |
tgaaatattttatgaactgataattaaaattggtcaaacc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37004868 |
tgaaatattttatgaactgataattaaaattggtcaaacc |
37004829 |
T |
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