View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_high_9 (Length: 240)
Name: NF3088_high_9
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_high_9 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 47366841 - 47366612
Alignment:
| Q |
11 |
acatcatctctggcacatccatgtcatgcccccatgtaagtgggttagctgctcttcttaagggagcccatcctgaatggagtcctgcagctataagatc |
110 |
Q |
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| T |
47366841 |
acatcatctctggcacatccatgtcatgcccccatgtaagtgggttagctgctcttcttaagggagcccatcctgaatggagtcctgcagctataagatc |
47366742 |
T |
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| Q |
111 |
cgcactcatgaccacgtcttatggcacgtacaaaaatgggcaaaccataaaagatgttgctactgggatacctgctacaccgttagattatggttccggg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47366741 |
cgcactcatgaccacgtcttatggcacgtacaaaaatgggcaaaccataaaagatgttgctactgggatacctgctacaccgttggattatggttccggg |
47366642 |
T |
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| Q |
211 |
catgtggatccagtagctgctcttgatcct |
240 |
Q |
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| T |
47366641 |
catgtggatccagtagctgctcttgatcct |
47366612 |
T |
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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 68165 - 68213
Alignment:
| Q |
11 |
acatcatctctggcacatccatgtcatgcccccatgtaagtgggttagc |
59 |
Q |
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|||| ||||| |||||||||||||||||||| ||||||||||| ||||| |
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| T |
68165 |
acattatctcaggcacatccatgtcatgccctcatgtaagtggattagc |
68213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 5725730 - 5725682
Alignment:
| Q |
11 |
acatcatctctggcacatccatgtcatgcccccatgtaagtgggttagc |
59 |
Q |
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|||| ||||| |||||||||||||||||||| |||| |||||| ||||| |
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| T |
5725730 |
acattatctcaggcacatccatgtcatgccctcatgcaagtggattagc |
5725682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 39738508 - 39738456
Alignment:
| Q |
11 |
acatcatctctggcacatccatgtcatgcccccatgtaagtgggttagctgct |
63 |
Q |
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|||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||| |
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| T |
39738508 |
acattatctctggaacatccatgtcctgccctcatgtgagtggtttagctgct |
39738456 |
T |
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