View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_low_1 (Length: 617)
Name: NF3088_low_1
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 7088197 - 7087592
Alignment:
| Q |
1 |
gttgtcaacactttcttggtggaaagtggctaaatactataaatcttattttcttataactaaaagttgcaatatttctgtacaaggtgtatttttatgg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7088197 |
gttgtcaacacgttcttggtggaaagtggctaaatactataaatcttattttcttataattaaaagttgcaatatttctgtacaaggtgtatttttatgg |
7088098 |
T |
|
| Q |
101 |
tgtacaagggaagctatgtttgttcttatttcacataatctcaatgtcttcatttccacaactgaacttgcgaccataacggcgaactgttggctggaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088097 |
tgtacaagggaagctatgtttgttcttatttcacataatctcaatgtcttcatttccacaactgaacttgcgaccataacggcgaactgttggctggaac |
7087998 |
T |
|
| Q |
201 |
gttgacttctgagaccggctaatgttaaactcagtcctgcgattatgagtgtctttatcatcgtggttgatggtttctaagggcttttgtggaagtgtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087997 |
gttgacttctgagaccggctaatgttaaactcagtcctgcgattatgagtgtctttatcatcgtggttgatggtttctaagggcttttgtggaagtgtaa |
7087898 |
T |
|
| Q |
301 |
cttgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgctttcccaacctcacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087897 |
cttgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgctttcccaacctcacc |
7087798 |
T |
|
| Q |
401 |
atgttccattgagtcttcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctatcttcagattcagtcttgtaggccctgtgaatg |
500 |
Q |
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| T |
7087797 |
atgttccattgagtcttcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctctcttcagattcagtcttgtaggccctgtgaatg |
7087698 |
T |
|
| Q |
501 |
tggattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactaaattttttgtcctcca |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7087697 |
tggattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagtgttatgacactgaattttttgtcctcca |
7087598 |
T |
|
| Q |
601 |
caggtt |
606 |
Q |
| |
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||||| |
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| T |
7087597 |
taggtt |
7087592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 7667952 - 7667595
Alignment:
| Q |
1 |
gttgtcaacactttcttggtggaaagtggctaaatactataaatcttattttcttataactaaaagttgcaatatttctgtacaaggtgtatttttatgg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
7667952 |
gttgtcaacactttcatggtggaaagtggctaaatactataaatcttattttcttatatttaaaagttgcaatatttctgtacaagatgtatttttatgg |
7667853 |
T |
|
| Q |
101 |
tgtacaagggaagctatgtt---tgttcttatttcacataatctcaatgtcttca------tttccacaactgaacttgcgaccataacggcgaactgtt |
191 |
Q |
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||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7667852 |
tgtacaagggaagatatgttgtttgttcttctttcacataatctcaatgtcttcactgttatttccacaactgaacttgcgaccataacggcgaactgtt |
7667753 |
T |
|
| Q |
192 |
ggctggaacgttgacttctgagaccggctaatgttaaactcagtcctgcgatta-tgagtgtctttatcatcgtggttgatggtttctaagggcttttgt |
290 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7667752 |
ggctggaaagttgacttttgagaccggctaatgttaaactcagtcctgcgatttgtgagtgtctttatcgtcgtggttgatggtttctaagggcttttgt |
7667653 |
T |
|
| Q |
291 |
ggaagtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtg |
348 |
Q |
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| T |
7667652 |
ggaagtgtaacttgaactccagggtctctttcattgattgaaccatgaaacatgagtg |
7667595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 373 - 598
Target Start/End: Complemental strand, 7667596 - 7667371
Alignment:
| Q |
373 |
tgttaacatatgctttcccaacctcaccatgttccattgagtcttcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctatcttc |
472 |
Q |
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|||||||||| || ||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7667596 |
tgttaacataagccttcccaatctcaccatgttccattgaatattcttcctcattgttagtgtttccttctccatctgttgtcacatcaatgctctcttc |
7667497 |
T |
|
| Q |
473 |
agattcagtcttgtaggccctgtgaatgtggattgacccttctttcttatctgattctgaaccaacatgcattgttgctcctctattgtcaccagtcagt |
572 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
7667496 |
agattcagtcttgtaggccctatgaatgtggattgagccttatttcttatctgattcagagccaacatgcattgttgctcctctattgtcaccagtcagt |
7667397 |
T |
|
| Q |
573 |
gttatgacactaaattttttgtcctc |
598 |
Q |
| |
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||||||||||| |||||||||||||| |
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| T |
7667396 |
gttatgacactgaattttttgtcctc |
7667371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 52386023 - 52385941
Alignment:
| Q |
303 |
tgaactccagggtctctttcattgattgaaccatgaaacatgagtgaattattgatactttgtatgttgctgttaacatatgc |
385 |
Q |
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||||| || ||||||||| |||| |||||||| || | ||| | ||||||||| ||||| |||||||||||||| |||||||| |
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| T |
52386023 |
tgaacgccggggtctcttccatttattgaaccttgcaccatcaatgaattattcatactctgtatgttgctgttcacatatgc |
52385941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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