View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3088_low_2 (Length: 382)

Name: NF3088_low_2
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3088_low_2
NF3088_low_2
[»] chr2 (10 HSPs)
chr2 (19-200)||(32186777-32186955)
chr2 (105-200)||(32178099-32178194)
chr2 (301-370)||(33401055-33401124)
chr2 (128-173)||(41545610-41545655)
chr2 (205-250)||(12758548-12758593)
chr2 (198-250)||(4505676-4505728)
chr2 (219-251)||(7162695-7162727)
chr2 (133-169)||(19334189-19334225)
chr2 (129-173)||(19336926-19336970)
chr2 (206-250)||(27506992-27507036)
[»] chr5 (3 HSPs)
chr5 (211-281)||(33046367-33046437)
chr5 (199-250)||(39544257-39544308)
chr5 (301-342)||(33046263-33046304)
[»] chr3 (10 HSPs)
chr3 (201-250)||(32741098-32741147)
chr3 (96-171)||(33271910-33271985)
chr3 (205-250)||(33426354-33426399)
chr3 (133-173)||(38850326-38850366)
chr3 (206-250)||(50939485-50939529)
chr3 (133-173)||(54365012-54365052)
chr3 (136-173)||(30797862-30797899)
chr3 (133-174)||(49042141-49042182)
chr3 (133-173)||(48508440-48508480)
chr3 (133-173)||(48953456-48953496)
[»] chr4 (15 HSPs)
chr4 (96-173)||(51421935-51422012)
chr4 (128-173)||(1793667-1793712)
chr4 (219-250)||(35780573-35780604)
chr4 (207-250)||(45560721-45560764)
chr4 (320-370)||(49006256-49006307)
chr4 (220-250)||(54779460-54779490)
chr4 (136-173)||(20601692-20601729)
chr4 (213-250)||(25887301-25887338)
chr4 (213-250)||(29690950-29690987)
chr4 (213-250)||(48694722-48694759)
chr4 (133-173)||(3979125-3979165)
chr4 (133-173)||(8286644-8286684)
chr4 (209-265)||(36441298-36441353)
chr4 (133-173)||(37773488-37773528)
chr4 (210-250)||(55809883-55809923)
[»] chr8 (5 HSPs)
chr8 (133-171)||(32569747-32569785)
chr8 (206-250)||(10917199-10917243)
chr8 (213-250)||(15270142-15270179)
chr8 (213-250)||(45193875-45193912)
chr8 (206-250)||(42600589-42600633)
[»] chr7 (11 HSPs)
chr7 (98-171)||(24777168-24777241)
chr7 (205-250)||(29241546-29241591)
chr7 (205-250)||(36698760-36698805)
chr7 (198-250)||(18777035-18777087)
chr7 (133-173)||(44951360-44951400)
chr7 (199-250)||(10027616-10027667)
chr7 (131-174)||(44401162-44401205)
chr7 (131-165)||(1523856-1523890)
chr7 (213-250)||(9939442-9939479)
chr7 (220-252)||(38190501-38190533)
chr7 (133-173)||(40979965-40980005)
[»] chr6 (8 HSPs)
chr6 (205-252)||(609850-609897)
chr6 (207-250)||(23070906-23070949)
chr6 (135-173)||(7513029-7513067)
chr6 (216-250)||(20711969-20712003)
chr6 (133-173)||(5096039-5096079)
chr6 (207-247)||(12083660-12083700)
chr6 (133-173)||(12890780-12890820)
chr6 (133-173)||(30031461-30031501)
[»] chr1 (10 HSPs)
chr1 (207-250)||(3406329-3406372)
chr1 (207-250)||(3440448-3440491)
chr1 (219-250)||(5027991-5028022)
chr1 (207-250)||(27906965-27907008)
chr1 (133-171)||(5113950-5113988)
chr1 (206-250)||(13913733-13913777)
chr1 (133-173)||(39318334-39318374)
chr1 (206-250)||(40502041-40502085)
chr1 (133-173)||(44941813-44941853)
chr1 (133-173)||(52532653-52532693)
[»] scaffold0369 (1 HSPs)
scaffold0369 (213-250)||(14385-14422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (143-171)||(86656-86684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (133-173)||(82923-82963)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 32186777 - 32186955
Alignment:
Q  19 ccgtctgcaaactctaatctagtagtattagtatattaccttgttatataggtagaagcagattgtccttgattgatacaacaacgaccaagctttaccg 118  Q
    ||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32186777 ccgtctgcaaactgtaatctagt---attagtatattaccttgttatataggtagaagcagattgtccttgattgatacaacaacgaccaagctttaccg 32186873  T
Q  119 tattaaataagattggctacataaatcaaattacgtcatagtgttctatcataaaaagtgacggatccacgttggctactat 200  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32186874 tattaaataagattggctacataaattaaattacgttatagtgttctatcataaaaagtgacggatccacgttggctactat 32186955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 32178099 - 32178194
Alignment:
Q  105 accaagctttaccgtattaaataagattggctacataaatcaaattacgtcatagtgttctatcataaaaagtgacggatccacgttggctactat 200  Q
    ||||||||||||  |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||    
T  32178099 accaagctttactatattaaatgagattggctacatagatcaaattacgtcatagtattctatcataaaaagtgacagattcacattggctactat 32178194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 33401124 - 33401055
Alignment:
Q  301 tgtttctttatttcaaccctcttattctcaattctccccaacctcgtgtccccgcccaacctccatctct 370  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  33401124 tgtttctttctttcaaacctcttattctcagttctccccaaccttgtgtccccgcccaacctccatctct 33401055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 41545655 - 41545610
Alignment:
Q  128 agattggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||||    
T  41545655 agatcggctaaataaatcaaattaagtcatagtgttctatcataaa 41545610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 12758548 - 12758593
Alignment:
Q  205 gccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||| |||||||||||||||||||| |  ||||||||||||||    
T  12758548 gccgtccatggggaggtgcaaacagctctatagagctgggcctccc 12758593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 4505676 - 4505728
Alignment:
Q  198 tatcagagccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| | ||||| || || |||||||||||||||| |||||||||||||||    
T  4505676 tatcaggggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccc 4505728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 7162695 - 7162727
Alignment:
Q  219 ggtgcaaacagctcaaccgagctgggcctccca 251  Q
    |||||||||||||||| ||||||||||||||||    
T  7162695 ggtgcaaacagctcaaacgagctgggcctccca 7162727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 19334189 - 19334225
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatca 169  Q
    |||||||| |||||||| |||||||||||||||||||    
T  19334189 ggctacatgaatcaaatgacgtcatagtgttctatca 19334225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19336926 - 19336970
Alignment:
Q  129 gattggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||||||  ||||||||||| |||| ||||||||||||||    
T  19336926 gattggctacatggatcaaattacgccataatgttctatcataaa 19336970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 27507036 - 27506992
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| || || ||||||||||||||||| ||||||||||||||    
T  27507036 ccgtccctgagggggtgcaaacagctcaacagagctgggcctccc 27506992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 33046437 - 33046367
Alignment:
Q  211 cttggggaggtgcaaacagctcaaccgagctgggcctcccaagttcatgggcctcgaaacaattgtagtcc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||    
T  33046437 cttggggaggtgcaaacagctcaaccgagctgggcctcccaagttcatgggcctaaaaaagattgtagtcc 33046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 39544257 - 39544308
Alignment:
Q  199 atcagagccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||| ||| ||| |||||||||||||||||||| || ||||||||||||||    
T  39544257 atcagggccatccctggggaggtgcaaacagctctactgagctgggcctccc 39544308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 33046304 - 33046263
Alignment:
Q  301 tgtttctttatttcaaccctcttattctcaattctccccaac 342  Q
    ||||||||| |||||||| ||||||||||| |||||||||||    
T  33046304 tgtttctttctttcaaccatcttattctcagttctccccaac 33046263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 32741098 - 32741147
Alignment:
Q  201 cagagccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  32741098 cagagccgtccctggggaggtgcaaacagctctaccgagctgggcctccc 32741147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 33271910 - 33271985
Alignment:
Q  96 acaacaacgaccaagctttaccgtattaaataagattggctacataaatcaaattacgtcatagtgttctatcata 171  Q
    |||||||| || |||||||| | |||||| |  | ||||||||||| ||||||| |||||||||||||||||||||    
T  33271910 acaacaacaactaagctttatcttattaagtggggttggctacatagatcaaatgacgtcatagtgttctatcata 33271985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 33426354 - 33426399
Alignment:
Q  205 gccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||    
T  33426354 gccgtccatggggaggtgcaaacagctcaatggagctgggcctccc 33426399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 38850366 - 38850326
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  38850366 ggctacatggatcaaattacgtcatagtgttctatcataaa 38850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 50939529 - 50939485
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| || |||||||||||||||||||| ||||||||||||||    
T  50939529 ccgtccctgaggaggtgcaaacagctcaacagagctgggcctccc 50939485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 54365012 - 54365052
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  54365012 ggctacatggatcaaattacgtcatagtgttctatcataaa 54365052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 30797862 - 30797899
Alignment:
Q  136 tacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  30797862 tacatagatcaaattacgtcataatgttctatcataaa 30797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 49042182 - 49042141
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaaa 174  Q
    ||||||||  ||||||||||| ||||||||||||||||||||    
T  49042182 ggctacatggatcaaattacgccatagtgttctatcataaaa 49042141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 48508480 - 48508440
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  48508480 ggctacatggatcaaattacgccatagtgttctatcataaa 48508440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 48953456 - 48953496
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  48953456 ggctacatggattaaattacgtcatagtgttctatcataaa 48953496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 51422012 - 51421935
Alignment:
Q  96 acaacaacgaccaagctttaccgtattaaataagattggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    |||||||| ||||||||||| |  | ||| | |||||||||||||  |||||||||||||||| ||||||||||||||    
T  51422012 acaacaacaaccaagctttatcccactaagtgagattggctacatggatcaaattacgtcataatgttctatcataaa 51421935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 1793712 - 1793667
Alignment:
Q  128 agattggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||    
T  1793712 agatcggctacatgaatcaaattacgtcatagtgctctatcataaa 1793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 35780604 - 35780573
Alignment:
Q  219 ggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||||||||||||||||||||||||||||    
T  35780604 ggtgcaaacagctcaaccgagctgggcctccc 35780573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 45560764 - 45560721
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  45560764 cgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 45560721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 49006256 - 49006307
Alignment:
Q  320 tcttattctcaattctcccc-aacctcgtgtccccgcccaacctccatctct 370  Q
    |||| |||||| |||||||| ||||||| |||||||||||||||||||||||    
T  49006256 tcttcttctcagttctcccctaacctcgcgtccccgcccaacctccatctct 49006307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 250
Target Start/End: Original strand, 54779460 - 54779490
Alignment:
Q  220 gtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||||||||||||||    
T  54779460 gtgcaaacagctcaaccgagctgggcctccc 54779490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 20601692 - 20601729
Alignment:
Q  136 tacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  20601692 tacatgaatcaaattacgtcataatgttctatcataaa 20601729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 25887338 - 25887301
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  25887338 tggggaggtgcaaacagctctacagagctgggcctccc 25887301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 29690987 - 29690950
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29690987 tggggaggtgcaaacagctctacagagctgggcctccc 29690950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 48694722 - 48694759
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  48694722 tggggaggtgcaaacagctctacagagctgggcctccc 48694759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 3979165 - 3979125
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  |||||||||||||||| ||||||||||||||    
T  3979165 ggctacatggatcaaattacgtcataatgttctatcataaa 3979125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 8286684 - 8286644
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  8286684 ggctacatggatcaaatgacgtcatagtgttctatcataaa 8286644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 36441353 - 36441298
Alignment:
Q  209 tccttggggaggtgcaaacagctcaaccgagctgggcctcccaagttcatgggcctc 265  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||  | |||||||||    
T  36441353 tccttggggag-tgcaaagagctcaaccgagctgggtctcccaaagtgatgggcctc 36441298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 37773488 - 37773528
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  37773488 ggctatatagatcaaattatgtcatagtgttctatcataaa 37773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 55809883 - 55809923
Alignment:
Q  210 ccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||||||||||||||||||| |  ||||||||||||||    
T  55809883 ccttggggaggtgcaaacagctctatagagctgggcctccc 55809923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 32569747 - 32569785
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcata 171  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  32569747 ggctacataaatcaaatgacgtcatagtgttctatcata 32569785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 10917199 - 10917243
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||    
T  10917199 ccgtccttgagggggtgcaaacagctcaacagagctgggcctccc 10917243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 15270179 - 15270142
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  15270179 tggggaggtgcaaacagctctacagagctgggcctccc 15270142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 45193912 - 45193875
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  45193912 tggggaggtgcaaacagctctacagagctgggcctccc 45193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 42600589 - 42600633
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| || || ||||||||||||||||| ||||||||||||||    
T  42600589 ccgtccctgagggggtgcaaacagctcaacagagctgggcctccc 42600633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 24777241 - 24777168
Alignment:
Q  98 aacaacgaccaagctttaccgtattaaataagattggctacataaatcaaattacgtcatagtgttctatcata 171  Q
    |||||| ||||||||||| |  | ||| || ||| |||||||| |||||||| |||||||||||||||||||||    
T  24777241 aacaacaaccaagctttatcccactaagtaggatcggctacatgaatcaaatgacgtcatagtgttctatcata 24777168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 29241591 - 29241546
Alignment:
Q  205 gccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||    
T  29241591 gccggccttggggaggtgcaaacagctctacagagctgggcctccc 29241546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 36698805 - 36698760
Alignment:
Q  205 gccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||    
T  36698805 gccggccttggggaggtgcaaacagctctacagagctgggcctccc 36698760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 18777087 - 18777035
Alignment:
Q  198 tatcagagccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| | ||||| || ||||||||||||||||||| |||||||||||||||    
T  18777087 tatcaggggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccc 18777035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 44951400 - 44951360
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  44951400 ggctacatggatcaaattacgtcatagtgttctatcataaa 44951360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 10027616 - 10027667
Alignment:
Q  199 atcagagccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||| |||| || |||||||||||||||||||| || ||||||||||||||    
T  10027616 atcagggccggccctggggaggtgcaaacagctctacagagctgggcctccc 10027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 44401162 - 44401205
Alignment:
Q  131 ttggctacataaatcaaattacgtcatagtgttctatcataaaa 174  Q
    ||||||||||  |||||||||||||||| |||||||||||||||    
T  44401162 ttggctacatggatcaaattacgtcataatgttctatcataaaa 44401205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 1523890 - 1523856
Alignment:
Q  131 ttggctacataaatcaaattacgtcatagtgttct 165  Q
    |||||||||| ||||||||||||||||||||||||    
T  1523890 ttggctacatgaatcaaattacgtcatagtgttct 1523856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 9939479 - 9939442
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  9939479 tggggaggtgcaaacagctctacagagctgggcctccc 9939442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 38190533 - 38190501
Alignment:
Q  220 gtgcaaacagctcaaccgagctgggcctcccaa 252  Q
    ||||||| |||||||||||||||||||||||||    
T  38190533 gtgcaaagagctcaaccgagctgggcctcccaa 38190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 40979965 - 40980005
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  40979965 ggctacatggatcaaattacgccatagtgttctatcataaa 40980005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 609897 - 609850
Alignment:
Q  205 gccgtccttggggaggtgcaaacagctcaaccgagctgggcctcccaa 252  Q
    ||||| ||| |||| ||||||| |||||||||||||||||||||||||    
T  609897 gccgttctttgggaagtgcaaagagctcaaccgagctgggcctcccaa 609850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 23070949 - 23070906
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  23070949 cgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 23070906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 7513029 - 7513067
Alignment:
Q  135 ctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  7513029 ctacatagatcaaattacgtcataatgttctatcataaa 7513067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 20712003 - 20711969
Alignment:
Q  216 ggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| ||||||||||||||    
T  20712003 ggaggtgcaaacagctcaacagagctgggcctccc 20711969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 5096079 - 5096039
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||| ||||||||||| |||| ||||||||||||||    
T  5096079 ggctacatagatcaaattacgccataatgttctatcataaa 5096039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 12083700 - 12083660
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcct 247  Q
    |||||||| || |||||||||||||||| ||||||||||||    
T  12083700 cgtccttgagggggtgcaaacagctcaaacgagctgggcct 12083660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 12890820 - 12890780
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  12890820 ggctacatggatcaaattacgccatagtgttctatcataaa 12890780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 30031501 - 30031461
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  30031501 ggctacatggatcaaattacgccatagtgttctatcataaa 30031461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 3406329 - 3406372
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  3406329 cgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 3406372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 3440491 - 3440448
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  3440491 cgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 3440448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 5028022 - 5027991
Alignment:
Q  219 ggtgcaaacagctcaaccgagctgggcctccc 250  Q
    ||||||||||||||||||||||||||||||||    
T  5028022 ggtgcaaacagctcaaccgagctgggcctccc 5027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 27907008 - 27906965
Alignment:
Q  207 cgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  27907008 cgtccttgagggggtgcaaacagctcaaacgagctgggcctccc 27906965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 5113988 - 5113950
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcata 171  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  5113988 ggctacatgaatcaaatgacgtcatagtgttctatcata 5113950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 13913777 - 13913733
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| || || ||||||||||||||||| ||||||||||||||    
T  13913777 ccgtccctgagggggtgcaaacagctcaacagagctgggcctccc 13913733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 39318374 - 39318334
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  39318374 ggctacatggatcaaattacgccatagtgttctatcataaa 39318334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 40502085 - 40502041
Alignment:
Q  206 ccgtccttggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||| || || ||||||||||||||||| ||||||||||||||    
T  40502085 ccgtccctgagggggtgcaaacagctcaacagagctgggcctccc 40502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 44941813 - 44941853
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  44941813 ggctacatggatcaaattacgccatagtgttctatcataaa 44941853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 52532653 - 52532693
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    |||||||| |||||||||||| |||| ||||||||||||||    
T  52532653 ggctacatgaatcaaattacgccataatgttctatcataaa 52532693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 14385 - 14422
Alignment:
Q  213 tggggaggtgcaaacagctcaaccgagctgggcctccc 250  Q
    |||||||||||||||||||| || ||||||||||||||    
T  14385 tggggaggtgcaaacagctctacagagctgggcctccc 14422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 86656 - 86684
Alignment:
Q  143 atcaaattacgtcatagtgttctatcata 171  Q
    |||||||||||||||||||||||||||||    
T  86656 atcaaattacgtcatagtgttctatcata 86684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 82963 - 82923
Alignment:
Q  133 ggctacataaatcaaattacgtcatagtgttctatcataaa 173  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  82963 ggctacatggatcaaatgacgtcatagtgttctatcataaa 82923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University