View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_low_4 (Length: 316)
Name: NF3088_low_4
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 7088484 - 7088277
Alignment:
| Q |
18 |
cagctttgacacaaaaccagcttgtgaatgataactcctttgaaatcttctttgatatcaaaatgtacatatttccttaagaaaatggtgcacaaagtaa |
117 |
Q |
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| T |
7088484 |
cagctttgacacaaaaccagcttgtgaatgataactcctttgaaatcttctttgatatcaaaatgtacatatttccttaagaaaatggtgcacaaaataa |
7088385 |
T |
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| Q |
118 |
ctctcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggattaatgtttaatgtgcaatgaagtttgttaatttcctcaagcatata |
217 |
Q |
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| T |
7088384 |
ctgtcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggattaatgtttaatgtgcaatgaagtttgttaatttcctcaagcatata |
7088285 |
T |
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| Q |
218 |
ttttcttg |
225 |
Q |
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|||||||| |
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| T |
7088284 |
ttttcttg |
7088277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 7668185 - 7668032
Alignment:
| Q |
72 |
atatcaaaatgtacatatttccttaagaaaatggtgcacaaagtaactctcatttttcaccctgcaggcccaagtttgtgtaatgctagatgtttaggat |
171 |
Q |
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| T |
7668185 |
atatcaaaatgtacgtatttccttaagaaaatggcgcacaaaataactctcatttttcaccctgcagtcccaagtgtgtgtaatgctagctgtttaggat |
7668086 |
T |
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| Q |
172 |
taatgtttaatgtgcaatgaagtttgttaatttcctcaagcatatattttcttg |
225 |
Q |
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| T |
7668085 |
taatgtttaatgtgtaatgaagtcttttaatttcctcaagcatatattttcttg |
7668032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 7668282 - 7668237
Alignment:
| Q |
135 |
gcaggcccaagtttgtgtaatgctagatgtttaggattaatgttta |
180 |
Q |
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|||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
7668282 |
gcagtcccaagtgtgtgtaatgctagctgtttaggattaatgttta |
7668237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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