View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_low_5 (Length: 312)
Name: NF3088_low_5
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 8138142 - 8138194
Alignment:
| Q |
204 |
gttggtttttgagatttcaaccaccatcgagaatgaagcttaaatccgatcaa |
256 |
Q |
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| T |
8138142 |
gttggtttttgacatttcaaccaccaccgagaatgaagcttaaatcctatcaa |
8138194 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 8138045 - 8138085
Alignment:
| Q |
39 |
aagataaaaggaatatattaaaaaatgattagaaccattca |
79 |
Q |
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| T |
8138045 |
aagataaaaggaatatattaaaaaatgataagaaccattca |
8138085 |
T |
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