View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3088_low_7 (Length: 256)

Name: NF3088_low_7
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3088_low_7
NF3088_low_7
[»] chr2 (1 HSPs)
chr2 (17-256)||(19495944-19496183)
[»] scaffold0363 (1 HSPs)
scaffold0363 (72-181)||(15499-15608)
[»] chr8 (9 HSPs)
chr8 (72-173)||(13164380-13164481)
chr8 (72-181)||(14403245-14403354)
chr8 (75-181)||(5568675-5568781)
chr8 (80-181)||(5562348-5562449)
chr8 (73-181)||(5624537-5624645)
chr8 (74-181)||(5598440-5598547)
chr8 (74-181)||(5636728-5636835)
chr8 (15-109)||(12190405-12190502)
chr8 (15-109)||(12434833-12434930)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 19495944 - 19496183
Alignment:
Q  17 tgaaggatcaatacggtagaacacaggaagaacaacaacctgtccactttttcttctacacttcattatttcaacaagttcatccaaacaccaactcgaa 116  Q
    |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19495944 tgaaggttcaatacggtagaacacaggaagaacaacaacttgtctactttttcttctacacttcattatttcaacaagttcatccaaacaccaactggaa 19496043  T
Q  117 tccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttcacaagttcgtcccaaatattttttccacttttgatgcggtagt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  19496044 tccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttcacaagttcgtcccagattttttttccacttttgatgcggtagt 19496143  T
Q  217 ctgtgtaggtccagaaatagtttcgatacaaagcagattc 256  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  19496144 ctgtgtaggtcaagaaatagtttcgacacaaagcagattc 19496183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 15499 - 15608
Alignment:
Q  72 ctacacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctt 171  Q
    ||||||| |||||||||||| ||||| | |||||||||  | |||  |||||||||||| |||||||| || ||||||||||| ||||  || |||||||    
T  15499 ctacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgtttgattgctt 15598  T
Q  172 tcacaagttc 181  Q
    | ||||||||    
T  15599 taacaagttc 15608  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 13164481 - 13164380
Alignment:
Q  72 ctacacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctt 171  Q
    ||||||| |||||||| ||| ||||| | |||||||||  | |||   |||||||||||||||||||| || ||||||||||| |||||||| |||||||    
T  13164481 ctacactccattatttgaactagttcgttcaaacaccatgttgaaaatgcgtagttctctgagaacacgacaagaaaaagagtggattcattgattgctt 13164382  T
Q  172 tc 173  Q
    ||    
T  13164381 tc 13164380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 14403354 - 14403245
Alignment:
Q  72 ctacacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctt 171  Q
    ||||||| |||||||||||| ||||| | |||||||||  | |||  |||||||||||| |||||||| || ||||||||||| ||||  || |||||||    
T  14403354 ctacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgtttgattgctt 14403255  T
Q  172 tcacaagttc 181  Q
    | ||||||||    
T  14403254 taacaagttc 14403245  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 5568781 - 5568675
Alignment:
Q  75 cacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttca 174  Q
    |||| ||||| |||||||||||||| |||||||||  | |||   || ||||||||||||||||| || ||||| ||||||||||  || |||||||||     
T  5568781 cactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtttgattgctttct 5568682  T
Q  175 caagttc 181  Q
    |||||||    
T  5568681 caagttc 5568675  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 5562449 - 5562348
Alignment:
Q  80 cattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttcacaagt 179  Q
    |||||||| ||| ||||||| |||||||||  | |||  |||||||||||| |||||||| || ||||| | ||| ||||  |||||||| |||||||||    
T  5562449 cattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattgtttcattgccttcacaagt 5562350  T
Q  180 tc 181  Q
    ||    
T  5562349 tc 5562348  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 5624645 - 5624537
Alignment:
Q  73 tacacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgcttt 172  Q
    |||||| |||||||| ||| ||||| | |||||||||  | ||   |||||||||||| ||||||||||| ||| | ||||| ||||  || ||||||||    
T  5624645 tacactccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttctccgagaacaccacaagatacagagtggattgtttgattgcttt 5624546  T
Q  173 cacaagttc 181  Q
    |||||||||    
T  5624545 cacaagttc 5624537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 5598440 - 5598547
Alignment:
Q  74 acacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttc 173  Q
    ||||| |||||||| ||| ||||| | |||||||||  | |||   || ||||||||||||||||| || ||||| ||||| ||||| || ||||||||     
T  5598440 acactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgcttta 5598539  T
Q  174 acaagttc 181  Q
    ||||||||    
T  5598540 acaagttc 5598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 5636835 - 5636728
Alignment:
Q  74 acacttcattatttcaacaagttcatccaaacaccaactcgaatccgcgtagttctctgagaacaccactagaaaaagagttgattcattcattgctttc 173  Q
    ||||| |||||||| ||| ||||| | |||||||||  | |||   || ||||||||||||||||| || ||||| ||||| ||||| || ||||||||     
T  5636835 acactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattctttgattgcttta 5636736  T
Q  174 acaagttc 181  Q
    ||||||||    
T  5636735 acaagttc 5636728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 12190405 - 12190502
Alignment:
Q  15 tgtgaaggatcaatacggtagaacacaggaagaacaacaac-ctgtccactt--tttcttctacacttcattatttcaacaagttcatccaaacacca 109  Q
    |||||||| || ||||||||||||||||||| |||||||||  ||||  | |  ||| || | ||||||||||||||||| ||||||| |||||||||    
T  12190405 tgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgcacttcattatttcaacgagttcattcaaacacca 12190502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 12434833 - 12434930
Alignment:
Q  15 tgtgaaggatcaatacggtagaacacaggaagaacaacaac-ctgtccactt--tttcttctacacttcattatttcaacaagttcatccaaacacca 109  Q
    |||||||| || ||||||||||||||||||| |||||||||  ||||  | |  ||| || | ||||||||||||||||| ||||||| |||||||||    
T  12434833 tgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgcacttcattatttcaacgagttcattcaaacacca 12434930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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