View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_low_8 (Length: 249)
Name: NF3088_low_8
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 26084908 - 26084672
Alignment:
| Q |
1 |
tgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26084908 |
tgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaaattttgtga |
26084809 |
T |
|
| Q |
101 |
atttaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgt |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084808 |
atctaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgt |
26084709 |
T |
|
| Q |
201 |
attctaagagaatttttgcagttgggatatagtgttc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
26084708 |
attctaagagaatttttgcagttgggatatagtgttc |
26084672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 26120459 - 26120234
Alignment:
| Q |
12 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
111 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| |
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| T |
26120459 |
ctcgagatctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaag |
26120360 |
T |
|
| Q |
112 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| | || ||||| |||||||||||||| |
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| T |
26120359 |
tcccattttacaaaagagacccggataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagaga |
26120260 |
T |
|
| Q |
212 |
atttttgcagttgggatatagtgttc |
237 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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| T |
26120259 |
atttttgcagttgggatacagtgttc |
26120234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 26097172 - 26096947
Alignment:
| Q |
12 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
26097172 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaag |
26097073 |
T |
|
| Q |
112 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||| | |||||||||| ||| ||||||| |||||||||||| |
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| T |
26097072 |
tcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagaga |
26096973 |
T |
|
| Q |
212 |
atttttgcagttgggatatagtgttc |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
26096972 |
atttttgcagttgggatatagtgttc |
26096947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 26065166 - 26064947
Alignment:
| Q |
18 |
gtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccat |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
26065166 |
gtctggttcactaatatcaagagagttggtatatctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccat |
26065067 |
T |
|
| Q |
118 |
tttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaattttt |
217 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26065066 |
tttacaaaagagacccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaattttt |
26064967 |
T |
|
| Q |
218 |
gcagttgggatatagtgttc |
237 |
Q |
| |
|
|||| |||||||||| |||| |
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|
| T |
26064966 |
gcagctgggatatagcgttc |
26064947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 26127116 - 26126891
Alignment:
| Q |
12 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
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| T |
26127116 |
ctcgaggtctggttcaccaatatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaag |
26127017 |
T |
|
| Q |
112 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
211 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||||||||||||||||| | | | ||||||||| |||||||||||||||||| ||||||| |
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| T |
26127016 |
tcccgttttacaaaagagacccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagaga |
26126917 |
T |
|
| Q |
212 |
atttttgcagttgggatatagtgttc |
237 |
Q |
| |
|
||||||||||||||||||||| |||| |
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| T |
26126916 |
atttttgcagttgggatatagcgttc |
26126891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 26036521 - 26036299
Alignment:
| Q |
15 |
gaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcc |
114 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||| |||||| |
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| T |
26036521 |
gaggtctggttctcaaatatcaagagagttggtatatctaattatctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcc |
26036422 |
T |
|
| Q |
115 |
cattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggg------gctgtctccgggcttaaatttcgtattctaag |
208 |
Q |
| |
|
|||||||| |||||||||| ||| ||| |||||| || |||||||| ||| || ||| |||||||||||||||||||||||||||||||| |
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|
| T |
26036421 |
cattttacaaaagagacccagatgatggtattgacaccattggaaaa----caa--ggagggaaccatgctgtctccgggcttaaatttcgtattctaag |
26036328 |
T |
|
| Q |
209 |
agaatttttgcagttgggatatagtgttc |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
26036327 |
agaatttttgcagttgggatatggtgttc |
26036299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
16 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
76 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
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|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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