View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3088_low_9 (Length: 243)
Name: NF3088_low_9
Description: NF3088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3088_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26084943 - 26085168
Alignment:
| Q |
1 |
tttaaccgctattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaa |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084943 |
tttaactgcgattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaa |
26085042 |
T |
|
| Q |
101 |
ggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttccttccgtcaactccctcacctgctttttcagctctgcatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26085043 |
ggtccagctttttcctgtttactcaatgcaagcaactttttttcagcctggtcttttccttccgtcaactccctcacctgttttttcagctctgcatttt |
26085142 |
T |
|
| Q |
201 |
tatctgataagagtgccacaaattct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26085143 |
tatctgataagagtgccacaaattct |
26085168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26065218 - 26065464
Alignment:
| Q |
1 |
tttaaccgctattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaa |
100 |
Q |
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|||||| || ||||| ||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26065218 |
tttaactgcgattttatctaatatatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaa |
26065317 |
T |
|
| Q |
101 |
ggtccagctttttcctgtttactcaatgcaagcaacnnnnnnncagcctggtcttttcc---------------------ttccgtcaactccctcacct |
179 |
Q |
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|||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||| ||||| | |
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| T |
26065318 |
ggtccagctttttcctgtttacctaatgcaagcaacattttttctgcctggtcttttccttgctctgcaagctgaagcctttccgtcaactcactcactt |
26065417 |
T |
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| Q |
180 |
gctttttcagctctgcatttttatctgataagagtgccacaaattct |
226 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26065418 |
gttttttcagctctgcatttttatctgataagagcgccacaaattct |
26065464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26120505 - 26120625
Alignment:
| Q |
1 |
tttaaccgctattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaa |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26120505 |
tttaactgcgattttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacaataggattggttcttaatgccttgacagtaccaaaa |
26120604 |
T |
|
| Q |
101 |
ggtccagctttttcctgttta |
121 |
Q |
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| T |
26120605 |
ggtccagctttttcctgttta |
26120625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 26127172 - 26127282
Alignment:
| Q |
11 |
attttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaaggtccagctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26127172 |
attttctctaataaatttgccaatctcgggttcacggattcatcaggagcaacattaggattggttcttaatgccttgacagtaccaaaaggtccagctt |
26127271 |
T |
|
| Q |
111 |
tttcctgttta |
121 |
Q |
| |
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|||||| |||| |
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|
| T |
26127272 |
tttcctcttta |
26127282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26097218 - 26097338
Alignment:
| Q |
1 |
tttaaccgctattttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaa |
100 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||| ||||||| | ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
26097218 |
tttaactgcgattttctctaatatctttgccaatcttgggttcacggattcatcaggagcaacattaggactggttcttattgccttgacagtaccaaaa |
26097317 |
T |
|
| Q |
101 |
ggtccagctttttcctgttta |
121 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
26097318 |
ggtccagctttttcctcttta |
26097338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 26036580 - 26036701
Alignment:
| Q |
11 |
attttctctaataaatttgccaatctcgggttcaagaattcatcaggagcaacagtaggattggttcttaatgccttgacagtaccaaaaggtccagctt |
110 |
Q |
| |
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|||||||| |||| ||||||||||| || |||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26036580 |
attttctccaatatctttgccaatcttggattcacggattcatcaggaacaacagtaggattggttcttaatcccttgacagtaccaaaaggtccagctt |
26036679 |
T |
|
| Q |
111 |
tttcctgtttactcaatgcaag |
132 |
Q |
| |
|
|||| ||||||| |||||||| |
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| T |
26036680 |
tttcttgtttacctaatgcaag |
26036701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 26097383 - 26097449
Alignment:
| Q |
160 |
ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccacaaattct |
226 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26097383 |
ttccgtcatctccctcaactgttttttcagctctgcatttttatctgataacagtgccacaaattct |
26097449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 26120685 - 26120745
Alignment:
| Q |
160 |
ttccgtcaactccctcacctgctttttcagctctgcatttttatctgataagagtgccaca |
220 |
Q |
| |
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||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
26120685 |
ttccgtcaactccctcaactgtttttttagctctgcatttttatctgataaaagtgccaca |
26120745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 26036754 - 26036799
Alignment:
| Q |
164 |
gtcaactccctcacctgctttttcagctctgcatttttatctgata |
209 |
Q |
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||||||||||||||||| ||||||||||| || ||||| ||||||| |
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| T |
26036754 |
gtcaactccctcacctgttttttcagctcagcgtttttgtctgata |
26036799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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