View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_12 (Length: 513)
Name: NF3090_high_12
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 961365 - 960923
Alignment:
| Q |
18 |
gtttcaaagtagaatatgcaaaagtataggcaggcacgtatggtacgcggagtannnnnnncttcttcttatgacaatcaagttttatgtgtagtttcat |
117 |
Q |
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| T |
961365 |
gtttcaaaatagaatatgcaaaagtataggcaggcacgtatggtacgcggagtatttttt--ttcttcttatgacaatcaatttttatgtgtagtttcat |
961268 |
T |
|
| Q |
118 |
taatgtaacaacaaagattcttttttaagggatcattgttatcaaagataaactcttcatgtcttcaaaggttggtcaaagcagcaaatgactgcttgta |
217 |
Q |
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| T |
961267 |
t---gtaacaacaaagattctt---------atcattgctatcaaagataaactcttcatgtcttcaaaagttggtcaaagaagcaaatgactgcttgta |
961180 |
T |
|
| Q |
218 |
tttttggatgagcatgtcaaaattacggcgatacgataattttggagagtcaacaaaacatagtttttgtcgaaattgtagtggctcatcataattctaa |
317 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||| |
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| T |
961179 |
tttttggatgagcatgtcaaaattacggtgatactataattttggagagtcaacaaaacatagtttttgtcgaaattacagtggttcactataattttaa |
961080 |
T |
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| Q |
318 |
ttgttcaattgtcaattcaaacatgttataactagattatggagataaaatataatccttcttgtatattttcattttcataaatatacaaaagagtgaa |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
961079 |
ttgtccaattgtcaattcaaacatgttataactagattatggagataaaatataatccttcttgtatattttcattttcataaatatacaaaagagtgaa |
960980 |
T |
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| Q |
418 |
ataaaatataatgcaaaaggattcggattgagtgactttatggaggaaaagttacca |
474 |
Q |
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| T |
960979 |
ataaaatataatgcaaaaggattcggattgagtgactttatggaggaaaagttacca |
960923 |
T |
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