View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_15 (Length: 493)
Name: NF3090_high_15
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 91 - 476
Target Start/End: Original strand, 49015689 - 49016074
Alignment:
| Q |
91 |
attaacagaggagcttcaagaagcaactctcagtgttaatgggaagtgcattgttgcaaagttgctaactacaacacttgtgggaactggttatggattg |
190 |
Q |
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| T |
49015689 |
attaacagaggagcttcaagaagcaactctcagtgttaatgggaagtgcattgttgcaaagttgctaactacaacacttgtgggaactggttatggattg |
49015788 |
T |
|
| Q |
191 |
tctaacaatggtatttttatttgtttttatgatcacatgagatacttgttatctttatcaatatggaaagtaaattttgattttgaaataagaaagttat |
290 |
Q |
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| T |
49015789 |
tctaacaatggtatttttatttgtttttatgatcacatgagatacttgttatctttatcaatacggaaagtaaattttgattttgaaataagaaagttat |
49015888 |
T |
|
| Q |
291 |
tacaattttaaatatacatgcatcaaatgctgtttttgttttaaatatttgtaggagtctttcttaggtaccctattgttggattcattaaccgaatgca |
390 |
Q |
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| T |
49015889 |
tacaattttaaatatacatgcatcaaatgctgtttttgttttaaatatttgtaggagtctttcttaggtaccctattgttggattcattaaccgaatgca |
49015988 |
T |
|
| Q |
391 |
gtcatcagggacatgtttagatagtttggataatcaaatggtcacagcgtgtccatgggactctagaatcaagggagaattctatc |
476 |
Q |
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| T |
49015989 |
gtcattagggacatgtttagatagtttggataatcaaatggtcacagcgtgttcatgggactctagaatcaagggagaattctatc |
49016074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 49015609 - 49015652
Alignment:
| Q |
16 |
atcgtagagtatagtagaaactaaaattgatctgtttaacatag |
59 |
Q |
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| T |
49015609 |
atcgtagagtatagtagaaactaaaattgatctgtttaacatag |
49015652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 366 - 466
Target Start/End: Complemental strand, 490802 - 490702
Alignment:
| Q |
366 |
ttgttggattcattaaccgaatgcagtcatcagggacatgtttagatagtttggataatcaaatggtcacagcgtgtccatgggactctagaatcaaggg |
465 |
Q |
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|||||||||||| |||||||| |||||||||||||||||| | |||||||||||| |||| ||| |||||||||| ||||||||| ||||| ||||| |
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| T |
490802 |
ttgttggattcaacaaccgaatacagtcatcagggacatgtctggatagtttggatgatcagatgagcacagcgtgtatatgggactcaagaattaaggg |
490703 |
T |
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| Q |
466 |
a |
466 |
Q |
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|
| T |
490702 |
a |
490702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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