View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_17 (Length: 468)
Name: NF3090_high_17
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 12264415 - 12263972
Alignment:
| Q |
16 |
aaaaggagaataagaaagagaccaacacaattcaaaccttcatttattgtgtttttctcatcttcacaaattcgttagagttacttagatcagggaaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12264415 |
aaaaggagaataagaaagagaccaacacaattcaaacctttatttgttgtgtttttctcaccttcacaaattcgttagagttacttagatcagggaaaat |
12264316 |
T |
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| Q |
116 |
tatttgtaccttagagtgctattttctagggtttttacaatcagagtaaactgatataactataaaaataagcacactcaagtaaattttcatttgaatc |
215 |
Q |
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| T |
12264315 |
tatttgtaccttagagtgctattttctagggtttttacaattagagtaaactgatataactataaaaataagcacactcaagtaaattttcatttgaatc |
12264216 |
T |
|
| Q |
216 |
cctaagaaaattttaaaatcaaatttagtctcggagaaaaataaaagcattgtttaagaggaataaaagcattcttttaagtcattgnnnnnnnnncaaa |
315 |
Q |
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| T |
12264215 |
cctaagaaaattttaaaatcaaatttagtctccgagaaaaataaaagcattgtttaagaggaataaaagcattcttttaagtcattg-aaaaaaaacaaa |
12264117 |
T |
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| Q |
316 |
tcagaataaattagttcgtaccttttttacacattatttgtttgatgaagtataggt--nnnnnnnnnnnnnnnnnnnngaagaaattattaagtagttt |
413 |
Q |
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| T |
12264116 |
tcagaataaattagttcgtaccttttttacacattatttgtttgatgaagtataggtaaaaaaaaaaagtaaataaaaagaagaaattattaagtagttt |
12264017 |
T |
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| Q |
414 |
agtatgagaaaattttagacaatccggattagttcactacctatg |
458 |
Q |
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| T |
12264016 |
agtatgagaaaattttagacaatccggattagttcactacctatg |
12263972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 17418448 - 17418491
Alignment:
| Q |
38 |
caacacaattcaaaccttcatttattgtgtttttctcatcttcac |
82 |
Q |
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| T |
17418448 |
caacacaattcaa-ccttcctttcttgtgtttttctcatcttcac |
17418491 |
T |
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