View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_2 (Length: 695)
Name: NF3090_high_2
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_2 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 587 - 1220
Alignment:
| Q |
1 |
tttgtcattggatttcatatc-acgttgattagaaaaattgtcacatcaccactttttaaatttaaaaatacgagggagagaccaaaaatctgaatttaa |
99 |
Q |
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|||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
587 |
tttgtcattggatttcatgtctacgttgattaaaaaaattgtcacatcaccactttttaaatttaaaatgt----ggaaagaccaaaaatctgaatttaa |
682 |
T |
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| Q |
100 |
aatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattggtccacattataggatatcaaaattgatacagaaaaaatcgaatatgataa |
199 |
Q |
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|| || ||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||| ||| | |||||||||||| |||||||||||||||||| |
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| T |
683 |
aagattggagactggttttatgagcgtggaaaaatgtaggttaaaattgatccacattatagaataccgaaattgatacaggaaaaatcgaatatgataa |
782 |
T |
|
| Q |
200 |
tttaagagaagtacattccaaaatctccaatcaataccattaaatcaacctaatcaagttgatgcccatattttgattatctaatgatacccatattttg |
299 |
Q |
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|||||||| |||||||| |||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
783 |
tttaagaggagtacatttcaaaatttccaatcaataccatcaaatcaacccaattaagttgatgcccatattttaattatctaatgatacccatattttg |
882 |
T |
|
| Q |
300 |
attatctaaaaatgcttgagaccaaaatgatggataaaagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtt |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
883 |
attatctaaaaatg-ttgagaccaaaatgatggataaaagatatatttaaggatgtgtttactattaattcaatattgtagttcaaaaatctaaattgtt |
981 |
T |
|
| Q |
400 |
tgtctacccnnnnnnnnnnnnnnnnnngtacacatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgcct |
499 |
Q |
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| T |
982 |
tgtctacccaaaaaatataaaataaaagtacacatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgcct |
1081 |
T |
|
| Q |
500 |
tttccatttgtgtgcaaatatgacaaatacactctttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtatt |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1082 |
tttccatttgtgtgcaaatatgacaaatacactctttgactggtctatttcctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtatt |
1181 |
T |
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| Q |
600 |
aagttcatcttcttcctttaaagattcattaacttccag |
638 |
Q |
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| T |
1182 |
aagttcatcttcttcctttaaagattcattaatttccag |
1220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 512 - 625
Target Start/End: Complemental strand, 18234973 - 18234861
Alignment:
| Q |
512 |
tgcaaatatgacaaatacactctttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaaaatttgtattaagttcatcttc |
611 |
Q |
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|||||||| || ||| | |||| ||||||||||||||| || |||||||||||| | || ||||||||||||||| ||||||| |||| |||||| || |
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| T |
18234973 |
tgcaaatacgataaacaaactcattgactggtctaattcctactcatcaacattgaactgtgcatgtgacatgtc-aaaatttatattgggttcattttt |
18234875 |
T |
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| Q |
612 |
ttcctttaaagatt |
625 |
Q |
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|||||||||||||| |
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| T |
18234874 |
ttcctttaaagatt |
18234861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 18235366 - 18235290
Alignment:
| Q |
72 |
gagggagagaccaaaaatctgaatttaaaatataggagactagttttatgagcgtgaaaaaatgtaggtcaaaattg |
148 |
Q |
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|||||| |||| ||| |||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||| |
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| T |
18235366 |
gagggaaagactaaatatctgaatttaaaagataggagaatagtgttatgagtacacaaaaatgtaggtcaaaattg |
18235290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 18235141 - 18235068
Alignment:
| Q |
288 |
acccatattttgattatctaaaaatgcttgagac--caaaatgatggataaaagatatatttaaggatgtgttt |
359 |
Q |
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| T |
18235141 |
acccatattttggttatctaaaaacatttttgacgacaaaatgatcgataaaagatatatttatggatgtgttt |
18235068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 6845103 - 6845049
Alignment:
| Q |
535 |
ttgactggtctaatttctgctcatcaacattcacctttgcatgtgacatgtcaaa |
589 |
Q |
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| T |
6845103 |
ttgactggtctaattcctgctcatcaacattcaactgtgcatgtgacatgtcaaa |
6845049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 431 - 517
Target Start/End: Complemental strand, 6825969 - 6825884
Alignment:
| Q |
431 |
acatagcatgtggattcttttagtatttttggctcaagccaaatttacttttatgttagttatttgccttttccatttgtgtgcaaa |
517 |
Q |
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| T |
6825969 |
acatggcatgtgggttctcttagtaattgtggcacaagccaactttactttt-tgttagctattttgtttttccatttgtgtgcaaa |
6825884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 431 - 517
Target Start/End: Complemental strand, 6813976 - 6813892
Alignment:
| Q |
431 |
acatagcatgtggattcttttagtatttttggctcaagccaaa-tttacttttatgttagttatttgccttttccatttgtgtgcaaa |
517 |
Q |
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| T |
6813976 |
acatagcatgtgggttcta--agtattcttggcacaagccaaactttactttt-tgttagctatttggtttttccatttgtgtgcaaa |
6813892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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