View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_24 (Length: 437)
Name: NF3090_high_24
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 42216862 - 42217265
Alignment:
| Q |
17 |
atgaagttgacaccatcagcaatggcctcatcaaagccagcaagcatgtccatgtcactgcacccaatggtccaacaaactttatacattgcaatacgtg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42216862 |
atgaagttgacaccatcagcaatggcctcatcaaagccagcaagcatgtccatgtcactgcacccaatggtccaacaaactttatacattgcaatgcgtg |
42216961 |
T |
|
| Q |
117 |
ctgatgggacaccgccacgggcattgcctttaccaatgccataaagacttgcacccctcaccactgatccagccgctgtcgacgaagtgtgagtgccatg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42216962 |
ctgatgggacaccgccacgggcattgcctttaccaatgccataaagacttgcacctctcaccactgatccagctgctgtcgacgaagtgtgagtgccatg |
42217061 |
T |
|
| Q |
217 |
gccctgatcatcaaccggacttgggttctcgatggttggaccagatgggtcgaggttgaagtattttgctcctatcaccttgctgcacaagaaaacaagt |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42217062 |
gccctgatcatccaccggacttgggttctcgatggttggaccagatgggtcgaggttgaagtattttgctcctatcaccttgctgcacaagaaaacaagt |
42217161 |
T |
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| Q |
317 |
ttaaatcaaatcaaccttgcatttgtatgcactatgcagtgcaatatctctctactttgggttagtctgctaataatgacatttaaatatatatagtttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42217162 |
ttaaatcaaatcaaccttgcatttgtatgcactatgcagtgcaatatctctctactttgggttagtctgctaataatgacatttaaatatatatagtttc |
42217261 |
T |
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| Q |
417 |
aatc |
420 |
Q |
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|||| |
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| T |
42217262 |
aatc |
42217265 |
T |
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