View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_high_28 (Length: 417)

Name: NF3090_high_28
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_high_28
NF3090_high_28
[»] chr6 (15 HSPs)
chr6 (1-139)||(34281584-34281724)
chr6 (29-115)||(29152387-29152477)
chr6 (38-136)||(29012543-29012641)
chr6 (39-136)||(25319568-25319666)
chr6 (39-136)||(26149261-26149359)
chr6 (38-107)||(32745182-32745251)
chr6 (32-102)||(29149027-29149097)
chr6 (33-111)||(34278768-34278846)
chr6 (38-94)||(32961062-32961118)
chr6 (38-136)||(29299780-29299878)
chr6 (39-136)||(29131014-29131111)
chr6 (38-136)||(29136963-29137061)
chr6 (47-136)||(29123817-29123906)
chr6 (39-94)||(23223694-23223749)
chr6 (38-101)||(29144998-29145061)
[»] chr4 (2 HSPs)
chr4 (38-124)||(37897610-37897696)
chr4 (38-136)||(37895668-37895766)
[»] chr7 (4 HSPs)
chr7 (38-136)||(42446025-42446123)
chr7 (39-82)||(5393745-5393788)
chr7 (39-80)||(5442083-5442124)
chr7 (39-80)||(5451093-5451134)
[»] scaffold0054 (2 HSPs)
scaffold0054 (38-101)||(40122-40185)
scaffold0054 (38-101)||(33771-33834)
[»] scaffold0134 (1 HSPs)
scaffold0134 (38-94)||(16545-16601)
[»] chr5 (2 HSPs)
chr5 (39-85)||(40548984-40549030)
chr5 (39-87)||(32642643-32642691)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 34281584 - 34281724
Alignment:
Q  1 tgacgtcaaagaatttgtatcttaccgga--gtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtct 98  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34281584 tgacgtcaaagaatttgtatcttaccggacagtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtct 34281683  T
Q  99 tctgtggactgtactgaaggcacccaaatctacatggacgg 139  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34281684 tctgtggactgtactgaaggcacccaaatctacatggacgg 34281724  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 29152477 - 29152387
Alignment:
Q  29 agtgccaaaatgggagatatata----gcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactga 115  Q
    |||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29152477 agtgccaaaatgggagatatatatatagcctaaggagtgactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactga 29152387  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29012543 - 29012641
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||| |||| ||||||||| ||| ||||||||| ||||||||||    
T  29012543 atgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattctttggactgtattgacggcacccaagtctacatgga 29012641  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 25319666 - 25319568
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtgga-ctgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||  |||  |||||||| ||||||| | ||||||||||    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgagggcacccgagtctacatgga 25319568  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 26149359 - 26149261
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtgga-ctgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||  |||  |||||||| ||||||| | ||||||||||    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgagggcacccgagtctacatgga 26149261  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 32745251 - 32745182
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggac 107  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||| ||||| |||||    
T  32745251 atgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttctttggac 32745182  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 29149097 - 29149027
Alignment:
Q  32 gccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctg 102  Q
    ||||| ||||||||| ||||||||||  |||||||| ||||||||| || |||||||||||||||||||||    
T  29149097 gccaacatgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttctg 29149027  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 34278846 - 34278768
Alignment:
Q  33 ccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgta 111  Q
    ||||||||||||||||||||||| |  ||||| ||||||||||||||||||| || |||||||| |||| |||| ||||    
T  34278846 ccaaaatgggagatatatagcctgataagtaattcgtggagagaacttgatgctgtcatgccgtattctatggaatgta 34278768  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 32961118 - 32961062
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    |||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  32961118 atgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgcc 32961062  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29299780 - 29299878
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||| |||||||||| |||| ||||||||| ||  ||||||||||||||||| | ||||   ||  ||||||| ||||||||| ||||||||||    
T  29299780 atgggagatgtatagcctaatgagtgactcgtggaaagtgcttgatgttgacatgccttattcttctgatcgtactgagggcacccaagtctacatgga 29299878  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 29131014 - 29131111
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||  ||  |||||||| |||||||||||||||||||||||||| | |||  | ||||||| || ||| |||||| |||| |||||    
T  29131014 tgggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgccttattcgttagactgtaatgcaggaacccaagtctatatgga 29131111  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29136963 - 29137061
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||  |||||| |||||||| | |||  ||||||| |||||||||||| ||||| ||||   ||| |||||||||||  ||||||||||    
T  29136963 atgggagatatatgacctaagaagtaactcctcgaggaaacttgaggttgacatgccgccttctttggatattacggaaggcacccatgtctacatgga 29137061  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 29123817 - 29123906
Alignment:
Q  47 atatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||| |||||||| |||||   ||||||||||||||||||| ||||| |||||  ||| || |||| |||  ||||||||||    
T  29123817 atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttctttggacactacagagggcaaccatgtctacatgga 29123906  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 23223749 - 23223694
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    |||||||||||||||||||  | ||||||||||||  ||||||| |||||||||||    
T  23223749 tgggagatatatagcctaacaattaactcgtggaggaaacttgacgttgacatgcc 23223694  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 29144998 - 29145061
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||| ||||| ||||||| ||||||  |||||||||||  |||||| ||||||    
T  29144998 atgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttct 29145061  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 37897610 - 37897696
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcaccca 124  Q
    ||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||||||    
T  37897610 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcaccca 37897696  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 37895668 - 37895766
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||| | ||||||||||| ||||| ||||||||  ||||||||||||||||||| | |||| |||| ||||  || ||||||||| |||| |||||    
T  37895668 atgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgccttattctttggaatgtaaggagggcacccaagtctatatgga 37895766  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42446025 - 42446123
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||| | |||| |||| |||| ||| ||||||||| ||||||||||    
T  42446025 atgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgccttattctttggaatgtattgagggcacccaagtctacatgga 42446123  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 5393788 - 5393745
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttga 82  Q
    |||||||||||||||||| |||||||||| |||||| |||||||    
T  5393788 tgggagatatatagcctacggagtaactcatggagaaaacttga 5393745  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 5442083 - 5442124
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaactt 80  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5442083 tgggagatatatagcctacgaagtaactcgtggagggaactt 5442124  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 5451093 - 5451134
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaactt 80  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5451093 tgggagatatatagcctacgaagtaactcgtggagggaactt 5451134  T

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Target: scaffold0054 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 40185 - 40122
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||    
T  40185 atgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttct 40122  T

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Target: scaffold0054; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 33834 - 33771
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||| ||||||    
T  33834 atgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttct 33771  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 16601 - 16545
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    ||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||    
T  16601 atgggagatatatagcctaacaagtaactcgtggaggaaacttgacgttgacatgcc 16545  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 40548984 - 40549030
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgt 85  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  40548984 tgggagatttatagcctaagaagtaactcgtggaggaaacttgatgt 40549030  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 32642643 - 32642691
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttg 87  Q
    ||||||||||||||  |||| |||||||| |||||| ||||||||||||    
T  32642643 tgggagatatatagtttaagaagtaactcttggagaaaacttgatgttg 32642691  T

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