View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_31 (Length: 410)
Name: NF3090_high_31
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_31 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 18309239 - 18309633
Alignment:
| Q |
4 |
ggaggagcagagatggttgtgcagcaagatgcttacagaacaaggaagagttgcaagttgcaagcacatcgttaaaattgatggtggt----------gg |
93 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18309239 |
ggaggaacagaaatggttgtgcagcaagatgcttacagaacaaggaagagttgcaagttgcaagcacatcgttaaaattgatggtggtttttgattgtgg |
18309338 |
T |
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| Q |
94 |
tc---ctcatagtgttgatggtcttgtaatgacggtggtaatgatgaaatttgcgctatagatagaaactttcttctttgtaaccaaagacttgatcgga |
190 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
18309339 |
tcatcctcatagtgttgatggtcttgtaatgacggtggtagtgatgaaatttgcgctatagatagaaattttcttctttgtaaccaaagacttgataaga |
18309438 |
T |
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| Q |
191 |
aaaatgcaaatgttgagcataaaagacacagcttaaaatcaaacttgatcattgtcaattctcttagcacaaaaataaaaccctgtttggagctaatata |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18309439 |
aaaatgcaaatgttgagcataaaagacacagcttaaaatcaaacttgatcattgtcaattctcttagcacaaaaataaaaccctgtttggagctaatata |
18309538 |
T |
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| Q |
291 |
tgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatga |
385 |
Q |
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| T |
18309539 |
tgtacattggatctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatga |
18309633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 4 - 385
Target Start/End: Complemental strand, 18159171 - 18158784
Alignment:
| Q |
4 |
ggaggagcagagatggttgtgcagcaagatgcttacagaacaaggaagagttgcaagttgcaagcacatcgttaaaattgatggtggt------------ |
91 |
Q |
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| T |
18159171 |
ggaggaacagaaatggttgtgcagcaagatgcttacagaacaaggaagagttgcaag-------cacatcgttaaaattgatggtggtttttgattgtgg |
18159079 |
T |
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| Q |
92 |
-ggtcctcatagtgttgatggtcttgtaatgacggtggtaatgatgaaatttgcgctatagatagaaactttcttctttgtaaccaaagacttgatcgga |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18159078 |
tggtcctcatagtgttgatggtcttgtaatgacggtggtagtgatgaaatttgcgctatagatagaaactttcttctttgtaaccaaagacttgataaga |
18158979 |
T |
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| Q |
191 |
aaaatgcaaatgttgagcataaaagacacagcttaaaatcaaacttgatcattgtcaattctcttagcacaaaaataaaaccctgtttggagctaatata |
290 |
Q |
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| T |
18158978 |
aaaatgcaaatgttgagcataaaagacacagcttaaaatcaaacttgatcattgtcaattctcttagcacaaaaataaaaccctgtttggagctaatata |
18158879 |
T |
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| Q |
291 |
tgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatga |
385 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18158878 |
tgtacattggatctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatga |
18158784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 319
Target Start/End: Original strand, 18302785 - 18302981
Alignment:
| Q |
134 |
atgaaatttgcgctatagatagaaactt------tcttctttgtaaccaaagacttgatcggaaaaatgcaaatgttgagcataaaagacac--agctta |
225 |
Q |
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|||||||| ||||||||||||||||||| ||||||| ||||||||||| || | ||||||||||||||||||||||| ||||||| | |||| |
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| T |
18302785 |
atgaaattcgcgctatagatagaaacttaaactttcttctt-gtaaccaaagattttacaagaaaaatgcaaatgttgagcatacaagacacgcaactta |
18302883 |
T |
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| Q |
226 |
aaatcaaacttgatcattgtcaattctcttagcacaaaaataaaaccctgtttggagc----taatatatgtacattggttctccacaaaacagcaat |
319 |
Q |
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| T |
18302884 |
aaatcaaacttgatcattgtcaattcttttagcacaaaaataaaactcggtttggaactaattaatatatgtacattggatctccacacaacagcaat |
18302981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 314 - 392
Target Start/End: Complemental strand, 18158784 - 18158707
Alignment:
| Q |
314 |
agcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatgaacaaggt |
392 |
Q |
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| T |
18158784 |
agcaatggctctgtggatacaaattcactg-atgtttataaaagtgagaacaaggtgaaatgctctacatgaacaaggt |
18158707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 18309633 - 18309710
Alignment:
| Q |
314 |
agcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatgaacaaggt |
392 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18309633 |
agcaatggctctgtggatacaaattcactg-atgtttataaaagtgagaacaaggtgaaatgctctacatgaacaaggt |
18309710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 45497138 - 45497075
Alignment:
| Q |
290 |
atgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttata |
353 |
Q |
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||||||||||| |||||||| |||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
45497138 |
atgtacattggatctccacacaacatcaatggttctgtggatacaaattcactacatgtttata |
45497075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 45504880 - 45504817
Alignment:
| Q |
290 |
atgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttata |
353 |
Q |
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||||||||||| |||||||| |||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
45504880 |
atgtacattggatctccacacaacatcaatggttctgtggatacaaattcactacatgtttata |
45504817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 18160104 - 18160065
Alignment:
| Q |
4 |
ggaggagcagagatggttgtgcagcaagatgcttacagaa |
43 |
Q |
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|||||| |||| |||||||||||||||||||||||||||| |
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| T |
18160104 |
ggaggaacagaaatggttgtgcagcaagatgcttacagaa |
18160065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 290 - 392
Target Start/End: Complemental strand, 25936566 - 25936465
Alignment:
| Q |
290 |
atgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatgaacaa |
389 |
Q |
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||||||||||| |||||||| |||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |
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| T |
25936566 |
atgtacattggatctccacacaacaacaatggtt-tgtggatacaaattcactgcatgtttataaaagtgagaataaggtgaaatgctccacatgaataa |
25936468 |
T |
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| Q |
390 |
ggt |
392 |
Q |
| |
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||| |
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| T |
25936467 |
ggt |
25936465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 290 - 392
Target Start/End: Original strand, 16055 - 16157
Alignment:
| Q |
290 |
atgtacattggttctccacaaaacagcaatggctctgtggatacaaattcactgcatgtttataaaagtgagaacaaggtgaaatgctctacatgaacaa |
389 |
Q |
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||||||||||| |||||||| |||| |||||| ||| | |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| || |
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| T |
16055 |
atgtacattggatctccacacaacaacaatggttctataaatacaaattcactgcatgtttataaaagtgagaataaggttaaatgctccacatgaataa |
16154 |
T |
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| Q |
390 |
ggt |
392 |
Q |
| |
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||| |
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| T |
16155 |
ggt |
16157 |
T |
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