View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_36 (Length: 381)
Name: NF3090_high_36
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 11295376 - 11295009
Alignment:
| Q |
1 |
atcagttgaataatgcagttgaaaggtagtgtttgcctattcaaaaatagtataataacttattgctatttaatcactttcctgcctaaattgaatttta |
100 |
Q |
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| T |
11295376 |
atcagttgaataatgcagttgaaaggtagtgtttgcctattcaaaaatagtataataacttattgctatttaatcactttcctgcctaaattgaatttta |
11295277 |
T |
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| Q |
101 |
ctgaaactaaatcagtaaggtagttattaaaattcagaaaatgacatgttatgttctgcatttttatagcatagtgatgtaatgtaacattaagtaaaaa |
200 |
Q |
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| T |
11295276 |
ctgaaactaaatcagtaaggtagttattaaaattcagaaaatgacatgttatgttctgcatttttatagcatagtgatgtaatgtaacattaagtaaaaa |
11295177 |
T |
|
| Q |
201 |
tggaaagatacaaaaaattgtaagaaagtagggtcatttgcatgagataacaatcacaagaggatgtggacaccgttttattaattgaaaaacacaatag |
300 |
Q |
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| T |
11295176 |
tggaaagatacaaaaaattgtaagaaagtagggtcatttgcatgagataacaatcacaagaggatgtggacaccgttttattaattaaaaaacacaatag |
11295077 |
T |
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| Q |
301 |
atatggaggtataatttgatgaatcaatgttcatgttttctttttgagagaacaataagtacatgttg |
368 |
Q |
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| T |
11295076 |
atatggaggtataatttgatgaatcaatgttcatgttttctttttgagagaacaataagttcatgttg |
11295009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 14186769 - 14186830
Alignment:
| Q |
4 |
agttgaataatgcagttgaaaggtagtgttt-gcctattcaaaaatagtataataacttatt |
64 |
Q |
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| T |
14186769 |
agttgaatagtgcaattgaaaggtagtgttttgcctattcaaaaatagtataatagcttatt |
14186830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 14186687 - 14186748
Alignment:
| Q |
4 |
agttgaataatgcagttgaaaggtagtgttt-gcctattcaaaaatagtataataacttatt |
64 |
Q |
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||||||||| |||| |||||||||||||||| |||||| |||||||||||||||| |||||| |
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| T |
14186687 |
agttgaatagtgcaattgaaaggtagtgttttgcctatgcaaaaatagtataatagcttatt |
14186748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 14186965 - 14187004
Alignment:
| Q |
133 |
ttcagaaaatgacatgttatgttctgcatttttatagcat |
172 |
Q |
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| T |
14186965 |
ttcagaaaatgacatgttatgttctacatttttatagcat |
14187004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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