View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_high_39 (Length: 351)

Name: NF3090_high_39
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_high_39
NF3090_high_39
[»] chr6 (2 HSPs)
chr6 (17-313)||(1134150-1134449)
chr6 (16-121)||(28050086-28050193)
[»] chr2 (15 HSPs)
chr2 (33-308)||(28167096-28167375)
chr2 (212-286)||(30545678-30545752)
chr2 (33-108)||(30547810-30547885)
chr2 (33-159)||(44904691-44904823)
chr2 (33-308)||(28165672-28165949)
chr2 (206-297)||(44906077-44906169)
chr2 (33-108)||(44905941-44906017)
chr2 (14-108)||(31559282-31559376)
chr2 (43-122)||(5696154-5696234)
chr2 (33-126)||(5694816-5694911)
chr2 (212-262)||(44904592-44904642)
chr2 (228-308)||(5696333-5696414)
chr2 (14-75)||(30545994-30546054)
chr2 (237-308)||(3751374-3751446)
chr2 (43-108)||(28563724-28563793)
[»] chr1 (14 HSPs)
chr1 (33-308)||(13222928-13223204)
chr1 (33-149)||(13229040-13229160)
chr1 (16-108)||(9419547-9419639)
chr1 (14-138)||(12097684-12097809)
chr1 (51-159)||(40767784-40767896)
chr1 (15-177)||(12096018-12096182)
chr1 (235-285)||(43882092-43882142)
chr1 (43-108)||(33753855-33753922)
chr1 (212-287)||(40767650-40767726)
chr1 (216-262)||(46605874-46605920)
chr1 (236-284)||(28360807-28360856)
chr1 (44-126)||(28253388-28253472)
chr1 (44-108)||(35381595-35381659)
chr1 (43-122)||(43882248-43882328)
[»] chr4 (7 HSPs)
chr4 (33-309)||(34539570-34539844)
chr4 (45-308)||(11148364-11148625)
chr4 (33-298)||(34538150-34538419)
chr4 (43-122)||(2671736-2671816)
chr4 (212-268)||(41246502-41246558)
chr4 (197-285)||(2671578-2671668)
chr4 (43-122)||(20946055-20946135)
[»] chr7 (9 HSPs)
chr7 (23-308)||(38758079-38758362)
chr7 (38-126)||(19639747-19639836)
chr7 (33-126)||(5975429-5975523)
chr7 (235-308)||(38756669-38756742)
chr7 (43-126)||(5974344-5974428)
chr7 (43-126)||(27160506-27160593)
chr7 (48-149)||(38756833-38756938)
chr7 (45-159)||(30045945-30046061)
chr7 (212-298)||(30045812-30045899)
[»] chr5 (5 HSPs)
chr5 (23-173)||(33489662-33489814)
chr5 (213-308)||(6535591-6535687)
chr5 (214-299)||(33489849-33489935)
chr5 (43-108)||(35931119-35931186)
chr5 (43-126)||(35929726-35929814)
[»] chr3 (17 HSPs)
chr3 (33-308)||(3149276-3149550)
chr3 (14-159)||(27662364-27662510)
chr3 (43-149)||(26537583-26537690)
chr3 (14-142)||(27661303-27661433)
chr3 (23-126)||(13645043-13645147)
chr3 (206-262)||(27661156-27661212)
chr3 (44-122)||(39870649-39870728)
chr3 (43-122)||(1677177-1677257)
chr3 (33-159)||(3149788-3149918)
chr3 (212-262)||(27662558-27662608)
chr3 (212-308)||(3149968-3150064)
chr3 (44-112)||(33552819-33552887)
chr3 (23-126)||(13645242-13645348)
chr3 (212-262)||(34595725-34595775)
chr3 (236-308)||(26537428-26537501)
chr3 (63-122)||(34594455-34594515)
chr3 (228-285)||(55196611-55196670)
[»] chr8 (2 HSPs)
chr8 (23-108)||(7274416-7274501)
chr8 (235-299)||(25562756-25562821)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 1134449 - 1134150
Alignment:
Q  17 agagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgatttagtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1134449 agagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgatttagtc 1134350  T
Q  117 cctctactaagttcagttgtcatctcatcaagttcc-----atgtatgtgtcgttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaa 211  Q
    |||||||||||| |||||||||||||||||||||||     |||||||||||||||||||||||||        ||||||||||||||||||| |||| |    
T  1134349 cctctactaagtccagttgtcatctcatcaagttccatgttatgtatgtgtcgttagccagctatgtttttt--tttctttcatagaaacggatggcaga 1134252  T
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaacctttaag 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1134251 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacataaaagatacgaagactaaaataaaaaacgtgttaacttacatgaacctttaag 1134152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 28050086 - 28050193
Alignment:
Q  16 gagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgatta-tgttttctaattttgtccctatgtaaatatgcgtttttga-ttta 113  Q
    |||||| ||||||| |||||| ||||  |||||||||| |||  |||||| ||| | |||| ||||||  |||||| |||||||||||||||| | ||||    
T  28050086 gagagaggaagaagatagaaacaatggtttttaaattttaaattttgatgtttacttttttttaatttcatccctacgtaaatatgcgttttttatttta 28050185  T
Q  114 gtccctct 121  Q
    ||||||||    
T  28050186 gtccctct 28050193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 33 - 308
Target Start/End: Original strand, 28167096 - 28167375
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct---aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagt 128  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| |   ||||| ||||||||||||| ||||||||||||||| |||||||||||||||     
T  28167096 gaaagaatgaattttaaattccaaaatttgatgattatgtttttttttaatttcgtccctatgtaaaaatgcgtttttgattttagtccctctactaaga 28167195  T
Q  129 tcagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 227  Q
     |||||| || ||||||| || |||  |||| ||| |||| ||||| |||        ||| ||| |   |||  || |||| ||||||||||||||||     
T  28167196 ccagttgccaactcatcatgtgccacatatgcgtctgttatccagcaatgcgtttt--ttttttttacgaaaatagacggcagagaccaatttcaaaagg 28167293  T
Q  228 ttaagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    |||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||| | ||||||||| | ||||||    
T  28167294 ttaagtaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgcgctaacttacagggaccttt 28167375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 30545752 - 30545678
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaac 286  Q
    |||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |||||||    
T  30545752 gaccaatttcaaaatattaagtaaatacaagagttgttttgcaacaaaaaagatacagagactaaaaccaaaaac 30545678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 30547810 - 30547885
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    ||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| ||||||||||| | ||||||    
T  30547810 gaaagaatgagttttaaattttaaaatttgatgattatgttttttaatttcgtccttatgtaaatatacatttttg 30547885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 44904823 - 44904691
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttct---aatttt-gtccctatgtaaatatgcgtttttgattt-agtccctctactaa 126  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| |   |||||  ||||||||||||| ||| |||||| |||| ||||||||||||||    
T  44904823 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttttaatttcagtccctatgtaaaaatgtgtttttcattttagtccctctactaa 44904724  T
Q  127 gttcagttgtcatctcatcaagttccatgtatg 159  Q
    |  |||||||||||||||||||| |||||||||    
T  44904723 gagcagttgtcatctcatcaagtgccatgtatg 44904691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 28165949 - 28165672
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 128  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| | | |||  |||| |||||||| ||||| |||| | ||||||||||||||||||     
T  28165949 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccttatgtaaaaatgcgcttttcgttttagtccctctactaaga 28165850  T
Q  129 tcagttgtcatctcatcaagttccatgtatgtg-tcgttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 227  Q
     |||||  |||||||||||||  || ||||| |  ||||||||||| |||        ||| ||| |  ||||| || | | | ||||||||||||||      
T  28165849 gcagtttccatctcatcaagtgtcacgtatgcgaccgttagccagcaatgctt-----ttttttttacggaaactgacgacgaggaccaatttcaaaaag 28165755  T
Q  228 ttaagtgaatacaagggttg-tttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    |||||  ||||||||||||| ||||||||| ||||||||||||  |||||||| |||||||| | ||||||||||| ||||||    
T  28165754 ttaagaaaatacaagggttgttttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacatggaccttt 28165672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 44906077 - 44906169
Alignment:
Q  206 ggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaa-caaaaaagatacaaagactaaaatcaaaaacgtgttaactta 297  Q
    |||| |||||||||||||||| |||||| ||||||| | |||||||||||  ||||||||||||| || ||||| |||||||| | |||||||    
T  44906077 ggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaataaaaaaagatacaaggattaaaaccaaaaacgcgctaactta 44906169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 44905941 - 44906017
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatg-ttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    |||||||| | ||||||||| ||||| |||||||||||| |||| |||||| ||||||||||||| |||| ||||||    
T  44905941 gaaagaattaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcatttttg 44906017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 31559282 - 31559376
Alignment:
Q  14 cagagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    |||| ||| ||||||| | |||| | ||| ||||||||||||||| | |||||||| || || ||||||  ||||||||||||||| ||||||||    
T  31559282 cagaaagatgaagaaggtggaaatattgatttttaaatttcaaaattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttg 31559376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 5696154 - 5696234
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    |||||||| ||||||  |||||||||||||||| || ||| |||||| ||||||| | ||||||| | |||||||||||||    
T  5696154 gttttaaaattcaaattttgatgattatgttttttattttcgtccctgtgtaaatttacgtttttggttttagtccctcta 5696234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 5694911 - 5694816
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatg-ttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaa 126  Q
    |||||| ||| ||||||| || ||||||||||||||||| |||| ||| || |||||||||| ||  ||||||||| | |||||||||| ||||||    
T  5694911 gaaagactgatttttaaaatttaaaaattgatgattatgtttttttaaattagtccctatgttaaattgcgtttttggttttagtccctatactaa 5694816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 44904642 - 44904592
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 262  Q
    ||||||||||||||  |||||  ||||||||||||||||||| ||||||||    
T  44904642 gaccaatttcaaaaagttaagaaaatacaagggttgtttcgcgacaaaaaa 44904592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 5696333 - 5696414
Alignment:
Q  228 ttaagtgaatacaagggttgtttcgcaacaaaa-aagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    |||||| ||||||  ||||||||| |||||||| ||||||||||||||||||  ||||| | |  |||||||||| ||||||    
T  5696333 ttaagtaaatacagaggttgtttcacaacaaaaaaagatacaaagactaaaactaaaaatgcgcaaacttacatggaccttt 5696414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 30546054 - 30545994
Alignment:
Q  14 cagagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgtttt 75  Q
    ||||| || ||||||| | |||| |||| |||||||||||||||| ||||||||||||||||    
T  30546054 cagagtgaggaagaaggtggaaataatg-gttttaaatttcaaaatttgatgattatgtttt 30545994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 3751374 - 3751446
Alignment:
Q  237 tacaagggttgtttcgcaaca-aaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||||||||||||||||||| |||||||||| || |||||||  ||||| | | ||| ||||||| ||||||    
T  3751374 tacaagggttgtttcgcaacagaaaaagataccaatactaaaacaaaaaatgcgctaatttacatggaccttt 3751446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 28563724 - 28563793
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttct----aattttgtccctatgtaaatatgcgtttttg 108  Q
    |||||||| |||||||||||| ||||||||||| |    ||||| ||||||||||||| |||| ||||||    
T  28563724 gttttaaaattcaaaaattgaagattatgtttttttttaaatttagtccctatgtaaaaatgcatttttg 28563793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 13223204 - 13222928
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttc 130  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||        
T  13223204 gaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctctactaacact 13223105  T
Q  131 agttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagatt 229  Q
    ||||| || |||||||  | ||| ||||| ||| |||||||| | |||        ||| ||| |  ||||  || ||||  ||||||||||||||| ||    
T  13223104 agttgccaactcatcatatgccacgtatgcgtctgttagccaacaatgcgtttt--ttttttttacggaaatagacggcagggaccaatttcaaaaggtt 13223007  T
Q  230 aagtgaatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    || | ||||||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||| | ||||||    
T  13223006 aaataaatacaagggttgtttcgcaacaaaaaagatacacggactaaaaccaaaaacgtgctaacttacagggaccttt 13222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 13229040 - 13229160
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaa-ttgatgattatgttttct-aatttt-gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 128  Q
    |||||| || |||| |||||||||||| |||||||||| ||||| | |||||| ||||||||||||| ||| |||||| | ||||||||||||||||||     
T  13229040 gaaagattgggtttaaaatttcaaaaaattgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaaga 13229139  T
Q  129 tcagttgtcatctcatcaagt 149  Q
     ||||||||||||||||||||    
T  13229140 gcagttgtcatctcatcaagt 13229160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 9419547 - 9419639
Alignment:
Q  16 gagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    |||||| ||||||| | |||||| ||  ||||||||||||||| |||||||||| ||||| ||||||  ||||||||||||||| ||||||||    
T  9419547 gagagatgaagaaggtggaaagattggtttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttg 9419639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 12097684 - 12097809
Alignment:
Q  14 cagagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gattt 112  Q
    |||||||| |||||||  ||||||  ||  ||||||| ||||||||||||| |||| ||||| ||||||  ||||||  |||| |||||||||| | |||    
T  12097684 cagagagaggaagaagaaagaaaggttggtttttaaaattcaaaaattgataattaagttttttaatttcatccctacctaaaaatgcgtttttggtttt 12097783  T
Q  113 agtccctctactaagttcagttgtca 138  Q
    |||||||||||||||  |||||||||    
T  12097784 agtccctctactaagaccagttgtca 12097809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 40767896 - 40767784
Alignment:
Q  51 tttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatctcatca 146  Q
    ||||||||||| |||||||| ||||| | | |||  |||| |||||||| |||||||||| | ||||||||||||||||||  |||||| ||||||||||    
T  40767896 tttcaaaaatttgatgattacgtttttttagtttcagtccttatgtaaaaatgcgtttttcgttttagtccctctactaagagcagttgccatctcatca 40767797  T
Q  147 agttccatgtatg 159  Q
    ||| ||| |||||    
T  40767796 agtgccacgtatg 40767784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 12096182 - 12096018
Alignment:
Q  15 agagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gattta 113  Q
    ||||||| |||||||  | ||||| ||  ||||||| ||||||||||||| |||| ||||| ||||||  ||||  |||||| |||||||||| | ||||    
T  12096182 agagagaggaagaagaaaaaaagattggtttttaaaattcaaaaattgataattaagttttttaatttcatccccgtgtaaaaatgcgtttttggtttta 12096083  T
Q  114 gtccctctactaagttcagttgtcatctcatcaagttccatgtatgtgt-cgttagccagctatg 177  Q
    ||| ||||||||||| || ||| || |||| ||| | ||| ||  |||| |||||||||||||||    
T  12096082 gtcactctactaagtccaattgccaactcaccaaatgccacgttggtgtccgttagccagctatg 12096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 43882142 - 43882092
Alignment:
Q  235 aatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaa 285  Q
    |||||| |||||||||||||||||||||||||||  |||||||| ||||||    
T  43882142 aatacaggggttgtttcgcaacaaaaaagatacagggactaaaaccaaaaa 43882092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 33753922 - 33753855
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttc--taattttgtccctatgtaaatatgcgtttttg 108  Q
    |||||||| |||||||||||| ||||| |||||   |||||| ||||||||||||| |||||||||||    
T  33753922 gttttaaaattcaaaaattgaagattacgtttttcttaatttagtccctatgtaaaaatgcgtttttg 33753855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 40767726 - 40767650
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacg 287  Q
    ||||||||||||||  |||||  ||||||| | |||||||||||||| ||||||||||  |||||||| ||||||||    
T  40767726 gaccaatttcaaaaagttaagaaaatacaaagattgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacg 40767650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 46605874 - 46605920
Alignment:
Q  216 aatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 262  Q
    ||||||||||  |||||  ||||||||||||||||||||||||||||    
T  46605874 aatttcaaaaagttaagaaaatacaagggttgtttcgcaacaaaaaa 46605920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 28360856 - 28360807
Alignment:
Q  236 atacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaa 284  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||| |||||    
T  28360856 atacaagagttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaa 28360807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 28253388 - 28253472
Alignment:
Q  44 ttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 126  Q
    ||||||| ||||||| |||||| |||  |||| | |||||  ||||||||||||| | ||||||||| |||||||||||||||||    
T  28253388 ttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaa 28253472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 35381659 - 35381595
Alignment:
Q  44 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    ||||||| ||||||||||||||||||  |||| |||||   |||||||||||| || ||||||||    
T  35381659 ttttaaaattcaaaaattgatgattacattttttaattacatccctatgtaaaaatacgtttttg 35381595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 43882328 - 43882248
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    |||||||| ||||||  |||||||||||||||| || ||  ||| |||||||||| | ||||||| | |||||||||||||    
T  43882328 gttttaaaattcaaattttgatgattatgttttttatttccgtctctatgtaaattttcgtttttggttttagtccctcta 43882248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 34539570 - 34539844
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatgttttct--aattttgtccctatgtaaatatgcgtttttgatttagtccctctactaagttc 130  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| |  ||||| ||||||||||||| |||| |||||| ||||||||||||||||||  |    
T  34539570 gaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcttttttgttttagtccctctactaagacc 34539669  T
Q  131 agttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagatt 229  Q
    ||||| || ||||||| ||  || ||||| ||| ||||| || | |||        ||| ||| | |||||  || || |  ||||||||||||||| ||    
T  34539670 agttgccaactcatcatgtgtcacgtatgcgtctgttagtcaacaatgcg------tttttttgacagaaatagacggtagggaccaatttcaaaaggtt 34539763  T
Q  230 aagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttta 309  Q
    |||| |||| ||||||||||||||||| |||||||||||| ||| ||||| |||||||| | ||||||||||| |||||||    
T  34539764 aagtaaatataagggttgtttcgcaacaaaaaaagatacagagattaaaaccaaaaacgcgctaacttacatggaccttta 34539844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 308
Target Start/End: Complemental strand, 11148625 - 11148364
Alignment:
Q  45 tttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttcagttgtcatctc 142  Q
    |||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||| ||||||| ||| ||||||||||||||| ||||||| || |||    
T  11148625 tttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagatcagttgccaactc 11148526  T
Q  143 atcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagattaagtgaatacaa 241  Q
    |||| || ||| || |||||| |||||||||| |||        ||| ||| |  ||||  || ||||  ||||||||||||||| |||||| |||||||    
T  11148525 atcatgtgccacgtttgtgtctgttagccagcaatgcg------tttttttgacggaaatagacggcagggaccaatttcaaaaggttaagtaaatacaa 11148432  T
Q  242 gggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||||||||||||| |||||||||| |  |||||||| |||||||| | ||||||||| | ||||||    
T  11148431 gggttgtttcgcaacaaaaaaagatatagcgactaaaaccaaaaacgcgctaacttacagggaccttt 11148364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 298
Target Start/End: Complemental strand, 34538419 - 34538150
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 128  Q
    |||||| || |||| |||||||||||||| |||||||| ||||| | | |||  ||||||||||||| |||||||||| | ||||||||||||||||||     
T  34538419 gaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgttttagtccctctactaaga 34538320  T
Q  129 tcagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaaga 227  Q
     |||||| ||||||||||||| ||| ||||| | | ||||| || | |||        ||| ||| |  ||||| || ||| | ||||| ||||||||      
T  34538319 gcagttgccatctcatcaagtgccacgtatgcgaccgttagtcaacaatgcttttt--ttttttttacggaaactgacggcgaggaccagtttcaaaaag 34538222  T
Q  228 ttaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacgtgttaacttac 298  Q
    |||||  |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||    
T  34538221 ttaagaaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgtgctaacttac 34538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 2671816 - 2671736
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    |||||||| ||||||  |||||||||||||||| || ||| |||||||||||||| ||||||||| | |||||||||||||    
T  2671816 gttttaaaattcaaattttgatgattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 41246502 - 41246558
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaagataca 268  Q
    ||||||||||||||||||| || ||||||| |||||||||| |||||||||||||||    
T  41246502 gaccaatttcaaaagattatgtaaatacaaaggttgtttcgtaacaaaaaagataca 41246558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 2671668 - 2671578
Alignment:
Q  197 gaaacggagggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa--aaaagatacaaagactaaaatcaaaaa 285  Q
    |||||||| ||||  ||| ||| ||||||  |||||| |||||| |||||||||||||||||  ||||||||||  |||||||| ||||||    
T  2671668 gaaacggacggcagggacgaatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacagggactaaaaccaaaaa 2671578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 20946135 - 20946055
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    |||||||| ||||||  ||||||||||| |||| || ||| |||||| ||||||| || |||||| | |||||||||||||    
T  20946135 gttttaaaattcaaattttgatgattatattttttattttcgtccctgtgtaaatttgtgtttttggttttagtccctcta 20946055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 38758079 - 38758362
Alignment:
Q  23 gaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctc 120  Q
    ||||||| | |||||||||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||| ||| ||||||| ||| ||||||||    
T  38758079 gaagaaggtggaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctc 38758178  T
Q  121 tactaagttcagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatt 219  Q
    |||||||  |||||| ||  |||||| || ||| ||||| ||| |||||||| | |||        ||| ||| |  ||||  || || |  ||||||||    
T  38758179 tactaagaccagttgccaattcatcatgtgccacgtatgcgtctgttagccaacaatgca------tttttttgacggaaatagacggtagggaccaatt 38758272  T
Q  220 tcaaaagattaagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||||||  |||||||| |||||||| | ||||||||| | ||||||    
T  38758273 tcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttt 38758362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 19639747 - 19639836
Alignment:
Q  38 aatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcg-tttttgatttagtccctctactaa 126  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||  |||||||||||| ||||| |||||| |||| ||||||||||||    
T  19639747 aatgagttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaacatgcgttttttgttttaatccctctactaa 19639836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 5975429 - 5975523
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgc-gtttttgatttagtccctctactaa 126  Q
    ||||||||  ||||||||||| |||  |||||||||||||||| |||||| |||||||||||||| |||  |||||| |||||||||||||||||    
T  5975429 gaaagaatatgttttaaattttaaattttgatgattatgttttttaatttcgtccctatgtaaatttgcattttttgttttagtccctctactaa 5975523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 38756742 - 38756669
Alignment:
Q  235 aatacaagggttgtttcgcaacaaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    |||||||||||| |||||||||||||||||||||  |||||||| |||||||| | ||||||||| | ||||||    
T  38756742 aatacaagggttatttcgcaacaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttt 38756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 5974428 - 5974344
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 126  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||| ||||||| || |||||| | ||||||| |||||||||    
T  5974428 gttttaaatttcaaactttgatgattatgttttttaattttatccctgtgtaaatttgtgttttttattttagtcgctctactaa 5974344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 27160593 - 27160506
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgtt---ttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 126  Q
    |||||||| |||||||||||| ||||| |||   || |||||| ||||||||||||| |||||||||||| |||||||||| ||||||    
T  27160593 gttttaaaattcaaaaattgaagattacgttattttttaatttagtccctatgtaaaaatgcgtttttgattttagtccctatactaa 27160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 38756938 - 38756833
Alignment:
Q  48 aaatttcaaaaatt-gatgattatgttttct-aatttt-gtccctatgtaaatatgcgttttt-gatttagtccctctactaagttcagttgtcatctca 143  Q
    |||||||||||||| |||||||| ||||| | |||||| ||||||||||||| ||| |||||| | ||||||||||||||||||  ||||||  ||||||    
T  38756938 aaatttcaaaaatttgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgcaatctca 38756839  T
Q  144 tcaagt 149  Q
    ||||||    
T  38756838 tcaagt 38756833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 30046061 - 30045945
Alignment:
Q  45 tttaaatttcaaaaattgatgattatgttttct-aattttgtccctatgtaaatatgcgtttttgattt-agtccctctactaagttcagttgtcatctc 142  Q
    |||||||| ||||| ||||| ||||| |||| | ||||| ||||||||||||| || |||||||| ||| ||||||||||||||| | ||||| || |||    
T  30046061 tttaaattccaaaatttgattattatatttttttaatttcgtccctatgtaaaaatacgtttttggttttagtccctctactaagattagttggcaactc 30045962  T
Q  143 atcaagttccatgtatg 159  Q
    |||| || ||| |||||    
T  30045961 atcatgtgccacgtatg 30045945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 30045899 - 30045812
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaa-aaaagatacaaagactaaaatcaaaaacgtgttaacttac 298  Q
    ||||||||||||||| |||| | |||||||| ||| ||||||||||| ||||||||||  |||| |||  ||||||| | ||||||||    
T  30045899 gaccaatttcaaaaggttaaataaatacaagagttatttcgcaacaaaaaaagatacatggacttaaacaaaaaacgcgctaacttac 30045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 33489662 - 33489814
Alignment:
Q  23 gaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgat-ttagtccctct 121  Q
    ||||||| | |||||||||| ||||||||||||||| |||||||||||||||| |||||  ||||||||||||| ||||||||||| | |||||||||||    
T  33489662 gaagaaggtggaaagaatgaattttaaatttcaaaatttgatgattatgttttttaattccgtccctatgtaaaaatgcgtttttggtattagtccctct 33489761  T
Q  122 actaagttcagttgtcatctcatcaagttccatgtatgtgt-cgttagccagc 173  Q
    ||||||  |||||| || |||||||||| |||  |||| || |||||||||||    
T  33489762 actaagaccagttgccaactcatcaagtgccacatatgcgtccgttagccagc 33489814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 6535591 - 6535687
Alignment:
Q  213 accaatttcaaaagattaagtgaatacaagggttgtttcgcaac--aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    |||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||  ||||||||| ||||||  | ||||||||||| ||||||    
T  6535591 accaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaaagatacatggactaaaataaaaaac-cgctaacttacatgtaccttt 6535687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 33489849 - 33489935
Alignment:
Q  214 ccaatttcaaaagattaagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttaca 299  Q
    ||||||| ||||  |||||| |||||| ||||||||||||||| ||||||||||||  ||||||||  ||||||| | |||||||||    
T  33489849 ccaattttaaaaagttaagtaaatacaggggttgtttcgcaacaaaaaaagatacagggactaaaacgaaaaacgcgctaacttaca 33489935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 35931119 - 35931186
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttc--taattttgtccctatgtaaatatgcgtttttg 108  Q
    |||||||| |||||||||||| ||||| |||||   |||||| ||||||||||||| |||||||||||    
T  35931119 gttttaaaattcaaaaattgaagattacgtttttcttaatttagtccctatgtaaaaatgcgtttttg 35931186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 35929814 - 35929726
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttct----aattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaa 126  Q
    |||||||| |||||||||||| ||||| ||||| |    ||||| ||| ||||||||| |||||||||||| |||||||||| ||||||    
T  35929814 gttttaaaattcaaaaattgaagattacgttttttttttaatttagtctctatgtaaaaatgcgtttttgattttagtccctatactaa 35929726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 3149550 - 3149276
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaattgatgattatg--ttttctaattttgtccctatgtaaatatgcgt-ttttgatttagtccctctactaagtt 129  Q
    |||||||||| ||||||||| ||||| ||||||||||||  |||| |||||| ||||||||||||| |||||| ||| | ||||||||||||||||||      
T  3149550 gaaagaatgaattttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctctactaagac 3149451  T
Q  130 cagttgtcatctcatcaagttccatgtatgtgtc-gttagccagctatgnnnnnnnctttctttcatagaaacggagggcaaagaccaatttcaaaagat 228  Q
    ||| || || ||||||| || |||||||||  || |||||||||| |||        ||| ||| |  ||||  || |||| |||||||||||||||| |    
T  3149450 cagctgccaactcatcatgtgccatgtatgcatctgttagccagcaatgcg------tttttttgacggaaatagacggcagagaccaatttcaaaaggt 3149357  T
Q  229 taagtgaatacaagggttgtttcgcaac-aaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||| |||||||||||||||||||||| ||||||||||||  |||||||| | |||||  | ||||||||| | ||||||    
T  3149356 taagtaaatacaagggttgtttcgcaacaaaaaaagatacatggactaaaacccaaaactggctaacttacagggaccttt 3149276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 27662364 - 27662510
Alignment:
Q  14 cagagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatg-ttttctaattttgtccctatgtaaatatgcgttttt-gatt 111  Q
    |||||||| ||||||| | |||| || |  ||||||||||||||| ||||| |||||| |||| |||||| || ||| ||||||||||||||||| | ||    
T  27662364 cagagagaggaagaaggtggaaataaaggattttaaatttcaaaatttgataattatgtttttttaatttcgt-cctctgtaaatatgcgtttttagttt 27662462  T
Q  112 tagtccctctactaagttcagttgtcatctcatcaagttccatgtatg 159  Q
    ||||||||||||||||  || ||| ||||||||||||| |||| ||||    
T  27662463 tagtccctctactaagaccaattgccatctcatcaagtaccatctatg 27662510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 26537690 - 26537583
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctctactaagttcagttgtcatct 141  Q
    ||||||||||  |||| |||||||||| ||||| ||||||  ||| ||| |||||||| |||||||| |||||||||||||||||   || |||||||||    
T  26537690 gttttaaattgtaaaatttgatgattacgttttttaatttcatccttatttaaatatgtgtttttgattttagtccctctactaacaccaattgtcatct 26537591  T
Q  142 catcaagt 149  Q
    ||||||||    
T  26537590 catcaagt 26537583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 27661433 - 27661303
Alignment:
Q  14 cagagagacgaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttt-tctaattttgtccctatgtaaatatgcgtt-tttgatt 111  Q
    |||||||||||||||| | ||||   ||||||||||||||||||| || |||||||  ||| | ||||||   ||||||||||||||| ||| |||| ||    
T  27661433 cagagagacgaagaaggtggaaattttgagttttaaatttcaaaattttatgattacatttctttaatttcacccctatgtaaatatgtgttatttgttt 27661334  T
Q  112 tagtccctctactaagttcagttgtcatctc 142  Q
    |||||||||||||||   |||||||||||||    
T  27661333 tagtccctctactaacaccagttgtcatctc 27661303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 13645147 - 13645043
Alignment:
Q  23 gaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctct 121  Q
    ||||||| | ||||||||   ||||| ||||||||  ||||| |||||||||| || ||| |||||||||||||| ||||||||| | ||||||||||||    
T  13645147 gaagaaggtggaaagaatacattttacatttcaaattttgattattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctct 13645048  T
Q  122 actaa 126  Q
    |||||    
T  13645047 actaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 27661212 - 27661156
Alignment:
Q  206 ggcaaagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 262  Q
    |||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  27661212 ggcagagaccaatttcaaaaaattaagtaaatacaaaggttgtttcgcaacaaaaaa 27661156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 39870728 - 39870649
Alignment:
Q  44 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttga-tttagtccctcta 122  Q
    ||||||| |||||||||||||||||| ||||| |||||   |||||||||||| || ||||||||| |||||||||||||    
T  39870728 ttttaaaattcaaaaattgatgattacgttttttaattacatccctatgtaaaaatacgtttttgattttagtccctcta 39870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 1677257 - 1677177
Alignment:
Q  43 gttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    |||||||| ||||||  |||||||||| ||||| || ||| |||||||||||||| ||||||||| | |||||||||||||    
T  1677257 gttttaaaattcaaattttgatgattacgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 1677177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 3149788 - 3149918
Alignment:
Q  33 gaaagaatgagttttaaatttcaaaaatt-gatgattatgttttctaatttt--gtccctatgtaaatatgcgttttt-gatttagtccctctactaagt 128  Q
    |||||| || |||| |||||| ||||||| |||||||| ||||| | | |||  ||||||||||||| |||||||||| | ||| |||||||||| |||     
T  3149788 gaaagattgggtttaaaattttaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgtttttgtccctctaccaaga 3149887  T
Q  129 tcagttgtcatctcatcaagttccatgtatg 159  Q
     ||| |||||||||||||||| ||| |||||    
T  3149888 gcagctgtcatctcatcaagtgccacgtatg 3149918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 27662558 - 27662608
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 262  Q
    ||||| ||||||||| |||||| |||||||||||||||| |||||||||||    
T  27662558 gaccactttcaaaaggttaagtaaatacaagggttgttttgcaacaaaaaa 27662608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 3149968 - 3150064
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaaga-tacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||||||||||||  |||||  |||||||||||| || |||||||||||| | ||||  |||||||| |||||||| ||||||||||| | ||||||    
T  3149968 gaccaatttcaaaaagttaagaaaatacaagggttatt-cgcaacaaaaaaaaatacagggactaaaaccaaaaacgcgttaacttacagggaccttt 3150064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 33552819 - 33552887
Alignment:
Q  44 ttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttgattt 112  Q
    |||||||||| |||  |||||| |||||||||  |||||||||||||||||||| ||  ||||||||||    
T  33552819 ttttaaattttaaattttgatgtttatgtttttcaattttgtccctatgtaaatttggatttttgattt 33552887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 13645242 - 13645348
Alignment:
Q  23 gaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaat--tttgtccctatgtaaatatgcgtttt-tgatttagtccct 119  Q
    ||||||| | ||||||||  |||||||||||||||  |||||||||||||||| |  |  ||  ||||||||||||| ||||||||  | ||||||||||    
T  13645242 gaagaaggtggaaagaatatgttttaaatttcaaattttgatgattatgttttttttttcttcttccctatgtaaatttgcgttttaggttttagtccct 13645341  T
Q  120 ctactaa 126  Q
    |||||||    
T  13645342 ctactaa 13645348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 34595725 - 34595775
Alignment:
Q  212 gaccaatttcaaaagattaagtgaatacaagggttgtttcgcaacaaaaaa 262  Q
    ||||||||||||||| ||||    |||||||||||||||||||||||||||    
T  34595725 gaccaatttcaaaaggttaacaagatacaagggttgtttcgcaacaaaaaa 34595775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 26537501 - 26537428
Alignment:
Q  236 atacaagggttgtttcgcaa-caaaaaagatacaaagactaaaatcaaaaacgtgttaacttacatgaaccttt 308  Q
    ||||||||||||||||||||  ||||||||||||   ||||||| |||||||||| || |||| ||| ||||||    
T  26537501 atacaagggttgtttcgcaataaaaaaagatacaggaactaaaaccaaaaacgtgctagcttatatggaccttt 26537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 34594515 - 34594455
Alignment:
Q  63 atgattatgttttctaattttgtccctatgtaaatatgcgttttt-gatttagtccctcta 122  Q
    ||||||||||||| ||||||  ||||||||||||| | ||||||| | |||||||||||||    
T  34594515 atgattatgttttttaatttcatccctatgtaaatttccgtttttggttttagtccctcta 34594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 55196670 - 55196611
Alignment:
Q  228 ttaagtgaatacaagggttgtttcgcaacaa--aaaagatacaaagactaaaatcaaaaa 285  Q
    |||||| |||||| |||||||||||||||||  ||||||||||  |||||||| ||||||    
T  55196670 ttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaa 55196611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 7274416 - 7274501
Alignment:
Q  23 gaagaagttagaaagaatgagttttaaatttcaaaaattgatgattatgttttctaattttgtccctatgtaaatatgcgtttttg 108  Q
    ||||||| | |||| ||| ||||||||| ||||||  |||||||||||||||| || |||  ||||||||||||| ||| ||||||    
T  7274416 gaagaaggtggaaataataagttttaaaattcaaattttgatgattatgttttttattttcatccctatgtaaatttgcatttttg 7274501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 25562756 - 25562821
Alignment:
Q  235 aatacaagggttgtttcgcaacaaaaaagat-acaaagactaaaatcaaaaacgtgttaacttaca 299  Q
    ||||||||||||||||||||||||||||  | | |  |||||||||||||||||||  ||||||||    
T  25562756 aatacaagggttgtttcgcaacaaaaaaacttagagggactaaaatcaaaaacgtgcgaacttaca 25562821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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