View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_4 (Length: 641)
Name: NF3090_high_4
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Complemental strand, 30666995 - 30666464
Alignment:
| Q |
13 |
gacatcatcagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
112 |
Q |
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| T |
30666995 |
gacatcacaagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
30666896 |
T |
|
| Q |
113 |
ctggacttaaacagtgagtgacttgctacgcaatttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaag |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666895 |
ctggacttaaacagtgagtgacttgctacgcattttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaag |
30666796 |
T |
|
| Q |
213 |
tttcttttgatctaacttgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgtt |
312 |
Q |
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| T |
30666795 |
tttcttttgatctaacctgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgtt |
30666696 |
T |
|
| Q |
313 |
gttcacatcaccaagaatttcttgaccctaccaaacatcaaggtatgtaaatttgacacatgattcctctataaactatgctatgactttagcagaattg |
412 |
Q |
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| T |
30666695 |
gttcacatcaccaagaatttcttgaccctaccaaacatcaaggtatgtaaatttgacacatgattcctctataaactatgctatgactttagcagaattg |
30666596 |
T |
|
| Q |
413 |
agatacatattcaatattttcatttttgtttttataggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagctt |
512 |
Q |
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| T |
30666595 |
agatacatattcaatattttcatttttgtttttataggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagctt |
30666496 |
T |
|
| Q |
513 |
gtctttgctaagatgggaatcaagtgagttct |
544 |
Q |
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| T |
30666495 |
gtctttgctaagatgggaatcaagtgagttct |
30666464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 34437067 - 34436947
Alignment:
| Q |
13 |
gacatcatcagaggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagta |
112 |
Q |
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||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34437067 |
gacatcacaagagggaagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgcagtcatgagttcttatgagtacattagta |
34436968 |
T |
|
| Q |
113 |
ctggacttaaacagtgagtga |
133 |
Q |
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| T |
34436967 |
ctggacttagacagtaagtga |
34436947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 34436585 - 34436457
Alignment:
| Q |
234 |
atgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgttgttcacatcaccaagaatttc |
333 |
Q |
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|||||||| ||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| |
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| T |
34436585 |
atgatggtatttcaggtacaaccttgacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgtacacatcactaagaacttc |
34436486 |
T |
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| Q |
334 |
ttgaccctaccaaacatcaaggtatgtaa |
362 |
Q |
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||||| || || || |||||||||||||| |
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| T |
34436485 |
ttgactctgcctaatatcaaggtatgtaa |
34436457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 448 - 542
Target Start/End: Complemental strand, 34436240 - 34436146
Alignment:
| Q |
448 |
aggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagcttgtctttgctaagatgggaatcaagtgagtt |
542 |
Q |
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||||||| ||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
34436240 |
aggttcctctcattcttggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaagatgggcatcaagtaagtt |
34436146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 6854189 - 6854143
Alignment:
| Q |
283 |
attgctcctgcttttatggacaagcttgttgttcacatcaccaagaa |
329 |
Q |
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| T |
6854189 |
attgcacctgcatttatggacaagcttgttgttcacatcactaagaa |
6854143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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