View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_47 (Length: 300)
Name: NF3090_high_47
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 32679729 - 32680010
Alignment:
| Q |
1 |
tgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaataga |
100 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679729 |
tgttatcttaaatatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaataga |
32679828 |
T |
|
| Q |
101 |
acacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcataca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32679829 |
acacatgacagttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcgtcttcataca |
32679928 |
T |
|
| Q |
201 |
aactctcgctgttaaacacacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaact |
284 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679929 |
aactctcgctgttaa--acacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaact |
32680010 |
T |
|
Back To:
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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 44806795 - 44806585
Alignment:
| Q |
2 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
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| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
102 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatacaa |
201 |
Q |
| |
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|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| | |||||||||||||||||||| ||||| |
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| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttgatgctgatcaaactcctcatcttcgtacaa |
44806597 |
T |
|
| Q |
202 |
actctcgctgtt |
213 |
Q |
| |
|
|||||| ||||| |
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| T |
44806596 |
actctcactgtt |
44806585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28136052 - 28136291
Alignment:
| Q |
1 |
tgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaat-agcatcgcacagttttcaatag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
28136052 |
tgttatctcaaatatcatgtaaaacacatcataacagct-----acatgaagaaagagactccatatatgcaaaaaacagcatcgcatagtcaccaatag |
28136146 |
T |
|
| Q |
100 |
aacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatac |
199 |
Q |
| |
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|||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || ||||||||||||| |||||||| |||| ||||| ||| |
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| T |
28136147 |
aacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttggtgctgatcaaaggcctcctcttcgtac |
28136246 |
T |
|
| Q |
200 |
aaactctcgctgttaaacacacacatacaaaacacgcatgtttaa |
244 |
Q |
| |
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|||||||| || || |||||| ||||||||| ||| ||||||||| |
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|
| T |
28136247 |
aaactctcactatttaacacatacatacaaaccacacatgtttaa |
28136291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 2230555 - 2230444
Alignment:
| Q |
4 |
tatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaaca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |
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| T |
2230555 |
tatctcaaatatcatgtaaaacacatcataacagcttagccacatgaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaaca |
2230456 |
T |
|
| Q |
104 |
catgacagttca |
115 |
Q |
| |
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|||||||||| |
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|
| T |
2230455 |
tgtgacagttca |
2230444 |
T |
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