View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_50 (Length: 291)
Name: NF3090_high_50
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 4872221 - 4871967
Alignment:
| Q |
15 |
gagatgaagattaaccaagtattaatgtccggtgtaacaggatgaaggttagggttttgcgattcaaattgtttagcaagtctaagaacagtgctgtgtt |
114 |
Q |
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| T |
4872221 |
gagatgaggattaaccaagtattaatgtccggtgtaacaggatgaaggttagggtcttgcgattcaaattgtttagcaagtctaagaacagtgctgtgtt |
4872122 |
T |
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| Q |
115 |
gatggatattaagaagggaagaaaaaagagcgatataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgagtagcagaattgat |
214 |
Q |
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| T |
4872121 |
gatggatattaagaagggaagaaaaaagagcgttataatcggatatggtagagtaaccgcgagagagcatgtcatcgaaatcacgagtagcagaattgat |
4872022 |
T |
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| Q |
215 |
ataagctattgtttccttcacccatttatagtaacaaggaggacgaggaagagga |
269 |
Q |
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| T |
4872021 |
ataagctattgtttccttcacccatttatagtaacaaggaggacgaggaagagga |
4871967 |
T |
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