View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_51 (Length: 288)
Name: NF3090_high_51
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_51 |
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| [»] scaffold0238 (2 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 13185 - 13008
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13185 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatat |
13086 |
T |
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| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
178 |
Q |
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| T |
13085 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
13008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 12931 - 12898
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaa |
288 |
Q |
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| T |
12931 |
tagtgattgacatgaacagaaaagtgcacacaaa |
12898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 10453349 - 10453172
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
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| T |
10453349 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgacagaagcaaatgagaggcgtggagctgaagaagatat |
10453250 |
T |
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| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
178 |
Q |
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| T |
10453249 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaactgagcatggcacacattaatcttttcctctttggttgtc |
10453172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 10453093 - 10453060
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
10453093 |
tagtgattgacatgaacagaaaagtgcacacaaa |
10453060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12603755 - 12603932
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagctgaagaagatat |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12603755 |
ggagataagtgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgatagaagcaaatgagaggcgtggagttgaagaagatat |
12603854 |
T |
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| Q |
101 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
178 |
Q |
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| T |
12603855 |
gtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
12603932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 23261881 - 23261701
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaag |
96 |
Q |
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| T |
23261881 |
ggagataaatgaccgttttaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaag |
23261783 |
T |
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| Q |
97 |
atatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
178 |
Q |
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|||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |
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| T |
23261782 |
atatgtgggaaaattatttacttataaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtc |
23261701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 12604011 - 12604044
Alignment:
| Q |
255 |
tagtgattgacatgaacagaaaagtgcacacaaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12604011 |
tagtgattgacatgaacagaaaagtgcacacaaa |
12604044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 56478066 - 56478246
Alignment:
| Q |
1 |
ggagataaatgaccattttaagatcatgcatctaagatagaggagaacaaatcaagaagatgat----agaagcaaatgagaggcgtggagctgaagaag |
96 |
Q |
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| T |
56478066 |
ggagataaatgaccgtattaagatcatgcttctaaaatagaggagatcaa-tcaagaagttgacctgaagaagcaaatgagaagcgtggagctgaagaag |
56478164 |
T |
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| Q |
97 |
atatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatcttttcctctttggttgtc |
178 |
Q |
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|||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |
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| T |
56478165 |
atatgtgggaaaataatttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatcttttccacttcggttgtc |
56478246 |
T |
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