View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_53 (Length: 283)
Name: NF3090_high_53
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4329426 - 4329161
Alignment:
| Q |
1 |
acacagcaagaagaagaagctctatttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcacaacctggaggtgatgttcaaag |
100 |
Q |
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| T |
4329426 |
acacagcaagaagaagaagctctgtttttctgtgtctctgcagcaccaactccaatgatgaacctgataataattcaaaacctggaggtgatgttcaaag |
4329327 |
T |
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| Q |
101 |
ccaagagctattggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtgaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329326 |
ccaagagctactggctcaacttgcaatgcttgagacagaaaaagttcgtcttacggattatttggatgaaagatctgaatatttgacacagtttggtgaa |
4329227 |
T |
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| Q |
201 |
gaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgat |
266 |
Q |
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| T |
4329226 |
gaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtgat |
4329161 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 24493345 - 24493246
Alignment:
| Q |
165 |
gatgaaagatctgaatatttgacacagtttggtgaagaagctaaagctgaaattgataagattggtgaagatgctcttaaaggattagatgaagctagtg |
264 |
Q |
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||||| ||||||| ||| || || || ||||||||| |||| || |||| |||| |||||||| |||||||| || |||| ||||||||||||||||| |
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| T |
24493345 |
gatgagagatctgcatacttaactcaatttggtgaaaaagcaaactctgagtttgaaaagattggagaagatgcactcaaagaattagatgaagctagtg |
24493246 |
T |
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