View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_57 (Length: 257)
Name: NF3090_high_57
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 32667220 - 32667447
Alignment:
| Q |
16 |
gagaccacgaccgggttgacttgacggatttcttggtggtcagagtagtatattcttcctagcatctttgtgatgagtgtgatggagaagaggtcataag |
115 |
Q |
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| T |
32667220 |
gagaccacgaccgggttgacttgacggatttcttggtggtcggagtagtatattcttcctagcatctttgtgatgagtgtgatggaaaaaaggtcataag |
32667319 |
T |
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| Q |
116 |
agtcagtgaaaagtcccattcctgctatgatgatggccttgaaatggtagtattgtgtttttgctgagtcaagggctgatagaaccttcaatcctcttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667320 |
agtcagtgaaaagtcccattcctgctatgatgatggccttgaaatggtagtattgtgtttttgctgagtcaagggctgatagaaccttcaatcctcttgc |
32667419 |
T |
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| Q |
216 |
cattttctgattttgaaacttgatattg |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32667420 |
cattttctgattttgaaacttgatattg |
32667447 |
T |
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