View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_61 (Length: 248)
Name: NF3090_high_61
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_61 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 34281367 - 34281606
Alignment:
| Q |
10 |
atgaacaaaataattatcgcaaaattgtattgtggaatcctactaccaaaataatcaaactt-ttccatgcagtaaggttgagtcggagaatttttctga |
108 |
Q |
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| T |
34281367 |
atgaacaaaataattatcgtaaaattgtattgtggaacccaactaccaaaataatcaaacttcttccatgtagtaaggttgagtcggagaatttttctga |
34281466 |
T |
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| Q |
109 |
tatttatgttccgtctcgtcttcatggatttggttataaccatgttacgaatgactataatgtcattcagcttataaaagtttgtataaaagaaaaacca |
208 |
Q |
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| T |
34281467 |
tatttatgttccgtctcgtcttcatggatttggttataaccatgttacgaatgactataatgtcattcagcttataaaagtttgtataaaagaaaaacca |
34281566 |
T |
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| Q |
209 |
tcatatgattactctggtgacgtcaaagaatttgtatctt |
248 |
Q |
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| T |
34281567 |
tcatatgattactctggtgacgtcaaagaatttgtatctt |
34281606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 29152718 - 29152500
Alignment:
| Q |
31 |
aaattgtattgtggaatcctactaccaaaataatcaaactt-ttccatgcagtaaggttgagtcggagaatttttctgatatttatgttccgtctcgtct |
129 |
Q |
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| T |
29152718 |
aaattgtagtgtggaacccaactacccaaataattaaagttcttacacctagtaaggttgagttggagaatttgtttaatatttttgctccttcccgtct |
29152619 |
T |
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| Q |
130 |
tcatggatttggttataaccatgttacgaatgactataatgtcattcagcttataaaagtttgtataaaagaaaaaccatcatatgattactctggtgac |
229 |
Q |
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| T |
29152618 |
tcatggatttggttataaccatgttacaaatgactataatgtcattcagcatataaaagtttgtatagaagaaaaaccatcatatgaatactctagtgac |
29152519 |
T |
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| Q |
230 |
gtcaaagaatttgtatctt |
248 |
Q |
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| T |
29152518 |
ctcaaagaaattgtatctt |
29152500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 34279018 - 34278870
Alignment:
| Q |
100 |
tttttctgatatttatgttccgtctcgtcttcatggatttggttataaccatgttacgaatgactataatgtcattcagcttataaaagtttgtataaaa |
199 |
Q |
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| T |
34279018 |
tttttttgatatttctgttaaggcccgtcttcatggatttggttataaccatgttacaaatgactataatgtcattcggcatgtaaaagtttttataaaa |
34278919 |
T |
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| Q |
200 |
gaaaaaccatcatatgattactctggtgacgtcaaagaatttgtatctt |
248 |
Q |
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| T |
34278918 |
ccaaattcatcaactgattacggaggtaacttcaaagaaattgtatctt |
34278870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 29149254 - 29149192
Alignment:
| Q |
114 |
atgttccgtctcgtcttcatggatttggttataaccatgttacgaatgactataatgtcattc |
176 |
Q |
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| T |
29149254 |
atgttgcgtctcgtcttcatggatttggttatgaccatgttataaacgactataatgtcattc |
29149192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 29299604 - 29299674
Alignment:
| Q |
106 |
tgatatttatgttccgtctcgtcttcatggatttggttataaccatgttacgaatgactataatgtcattc |
176 |
Q |
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| T |
29299604 |
tgatatttacgttatgtcccgtcttcatggatttggttatgaccttgttaaaaatgactacaaggtcattc |
29299674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 29012456 - 29012505
Alignment:
| Q |
127 |
tcttcatggatttggttataaccatgttacgaatgactataatgtcattc |
176 |
Q |
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| T |
29012456 |
tcttcatggatttggttatgaccgtgttacaaaagactataaggtcattc |
29012505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 2703335 - 2703384
Alignment:
| Q |
128 |
cttcatggatttggttataaccatgttacgaatgactataatgtcattca |
177 |
Q |
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| T |
2703335 |
cttcatggatttggttatgaccatgttagggatgactataaagtcattca |
2703384 |
T |
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