View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_62 (Length: 242)
Name: NF3090_high_62
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 8936300 - 8936087
Alignment:
| Q |
13 |
gagaagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaatt |
112 |
Q |
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| T |
8936300 |
gagaagaatagttgatactactatatatgaaaatgcagaagctcttactttggaaattcttaaatatcctacaacattacaaatgttccagcacgtaatt |
8936201 |
T |
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| Q |
113 |
tacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaattctcaaggtggccatgtttatgcca |
212 |
Q |
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| T |
8936200 |
tacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaattctcaaggtggccatgtttatgcta |
8936101 |
T |
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| Q |
213 |
ttgccggggatttg |
226 |
Q |
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|||||||||||||| |
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| T |
8936100 |
ttgccggggatttg |
8936087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 8924603 - 8924464
Alignment:
| Q |
87 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaa |
186 |
Q |
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| T |
8924603 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatgcagcttcttgcgtgaacaagtcgaa |
8924504 |
T |
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| Q |
187 |
ttctcaaggtggccatgtttatgccattgccggggatttg |
226 |
Q |
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| T |
8924503 |
ttctcaacgtggccatgtttatgccattgccggggatttg |
8924464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 8959765 - 8959626
Alignment:
| Q |
87 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcgaa |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |
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| T |
8959765 |
cattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcagatgcagcttcttgcgtgaacaagtcgaa |
8959666 |
T |
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| Q |
187 |
ttctcaaggtggccatgtttatgccattgccggggatttg |
226 |
Q |
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| T |
8959665 |
ttctcaacgtggccatgtttatgccattgccggggatttg |
8959626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 8945773 - 8945635
Alignment:
| Q |
85 |
aacattacaaatgttccagcacgtaatttacatgaattgtagcagtcctgtgagggatgatccggtgtatgcggatgcagctgcttgcatgaacaagtcg |
184 |
Q |
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| T |
8945773 |
aacattacgactattccagcacgtagtttacatgaattgcagcaatcctatactggatgatccagcgtacgtggatgcagattcttgcat---caagtcc |
8945677 |
T |
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| Q |
185 |
aattctcaaggtggccatgtttatgccattgccggggatttg |
226 |
Q |
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||||| |||||||||||||||||| ||||||| || |||||| |
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| T |
8945676 |
aattcccaaggtggccatgtttataccattgctggagatttg |
8945635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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