View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_high_71 (Length: 206)
Name: NF3090_high_71
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 1251238 - 1251415
Alignment:
| Q |
13 |
gcagagatgcatgagagagtaataaattgaagtgttgcaactaaagagttttgtggcaatataaacgaatagtgcaatgaaaaagtgtaataccctttgt |
112 |
Q |
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| T |
1251238 |
gcagagatgcatgagagagtaataaattgaagtgttgcaactaaagagttttgtagcaatataaacgaatagtgcaatgaaaaagtgtaataccctttgt |
1251337 |
T |
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| Q |
113 |
tttcctgtgaaagcttgacctcctgcttgctccatcaaatatgacattggaaaaacttcatacagaaccctgataatt |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1251338 |
tttcctgtgaaagcttgacctcctgcttgctccatcaaatatgacattggaaaaacttcatacagaaccctgataatt |
1251415 |
T |
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