View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_10 (Length: 546)
Name: NF3090_low_10
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 215 - 405
Target Start/End: Complemental strand, 47198946 - 47198753
Alignment:
| Q |
215 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
310 |
Q |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
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| Q |
311 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
405 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
47198753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
4 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
103 |
Q |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
104 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
185 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 47186309 - 47186214
Alignment:
| Q |
310 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
405 |
Q |
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| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctctggaat |
47186214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 462 - 531
Target Start/End: Complemental strand, 47198696 - 47198627
Alignment:
| Q |
462 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgt |
531 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgt |
47198627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 478 - 531
Target Start/End: Complemental strand, 47186141 - 47186088
Alignment:
| Q |
478 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgt |
531 |
Q |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgt |
47186088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 748369 - 748443
Alignment:
| Q |
325 |
cataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctc |
399 |
Q |
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| T |
748369 |
cataaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttcaattggtatgttcttggtctc |
748443 |
T |
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