View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_12 (Length: 536)
Name: NF3090_low_12
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 36 - 526
Target Start/End: Original strand, 46921971 - 46922461
Alignment:
| Q |
36 |
gaaaaatatttagttttaaattgcggttaggatcacatttttacttttgtgttttgattgatgaattttgcagggtgatcaagcatcaattattgggggt |
135 |
Q |
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| T |
46921971 |
gaaaaatatttagttttaaattgctgttaggatcacatttttacttttgtgttttgattgatgaattttgcagggtgatcaagcatcaattattgggggt |
46922070 |
T |
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| Q |
136 |
gctattaactttgttaagaagcttgagcagaagctacaatttcttggtgtacaaaaacaaaaggagggtaaatttgatactattgttgaaaataaaaaca |
235 |
Q |
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| T |
46922071 |
gctattaactttgttaagaagcttgagcagaagctacaatttcttggtgtacaaaaacaaaaggagggtaaatttgatactattgttgaaaataaaaaca |
46922170 |
T |
|
| Q |
236 |
agcccttttctgaattttttacctttccacaatactcaacaagtgacggtgtgtgtgagagttctgagacaaaaatgggtggtgaggttcaatctcgcaa |
335 |
Q |
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| T |
46922171 |
agcccttttctgaattttttacctttccacaatactcaacaagtgacggtgtgtgtgagagttctgagacaaaaatgggtggtgaggttcaatctcgcaa |
46922270 |
T |
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| Q |
336 |
tattgctgatattgaagtgacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttg |
435 |
Q |
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| T |
46922271 |
tattgctgatattgaagttacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttg |
46922370 |
T |
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| Q |
436 |
catggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgtcttctattctctcagcgttaaggtaattgtctgtg |
526 |
Q |
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| T |
46922371 |
catggattgtgtctcacaatcttgcaccttaatgtcactacagctgatgaatttgtcttctattctctcagcgttaaggtaattgtctgtg |
46922461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 437
Target Start/End: Complemental strand, 36675915 - 36675815
Alignment:
| Q |
337 |
attgctgatattgaagtgacaatggttgaaagccatgcaaatctcaaaataagaacaaagaaaagaccaaaacagctcttgaagatggtttctagtttgc |
436 |
Q |
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|||||||| || |||||||||||||| |||| |||||||||||| ||||||||| ||| || || ||||| ||||||||||| || || ||| |||||| |
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| T |
36675915 |
attgctgacatagaagtgacaatggtggaaaaccatgcaaatcttaaaataagatcaagaaagaggccaaagcagctcttgaaaattgtatctggtttgc |
36675816 |
T |
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| Q |
437 |
a |
437 |
Q |
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| T |
36675815 |
a |
36675815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 36676160 - 36676080
Alignment:
| Q |
104 |
tgcagggtgatcaagcatcaattattgggggtgctattaactttgttaagaagcttgagcagaagctacaatttcttggtg |
184 |
Q |
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| T |
36676160 |
tgcagggtgatcaagcttctataattggaggagctattaactttgttaaagagcttgagcacaagtttcattttcttggtg |
36676080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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