View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_14 (Length: 508)
Name: NF3090_low_14
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 25788702 - 25788211
Alignment:
| Q |
1 |
catgaatgtagttgttggataagtctaggccattttagatggggttgatttctcatgaactttggaaattccctcaacttacaagaagctaacaacagat |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
25788702 |
catgaatgtagttgttggataagtctaggccattt-agatggggttgatttctcaagaactttggaaactccatcaacttacaagaagctaacaacagat |
25788604 |
T |
|
| Q |
101 |
atttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaatgtatttaaactctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788603 |
atttcatctttggaaaggatgaaaggccatcatgattttcattgaaagttatatcaactgacaaattgttgtatgagaggcctaatgtatttaaactctg |
25788504 |
T |
|
| Q |
201 |
cagcctctgaatcatgtcaagccgcattgtgccattggtcaaaccgcatcc-cacaaattattgtgcaacagcgataaatatcgaagttctttactcatt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25788503 |
cagcctctgaatcatgtcaagccgcattgtgccattgttcaagccgcatcctgtcaaattattgtgcaacagcgataaatatcgaagttctttactcatt |
25788404 |
T |
|
| Q |
300 |
ctgaaagagggaagtgtaccaataaagttattgaatgataagtctaaatgaacaattacagtatattgtcaaatcctttatatttttaaggcaaacaaac |
399 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||| |
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| T |
25788403 |
ctgaaagagggaagtgtagcaataaagttattgaatgataagtctaaatgaacaattacagtatactgtcaaatcctttata--tttaaggtaatcaaac |
25788306 |
T |
|
| Q |
400 |
gaccacaagtgtaaaaccaataaactaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgcggttatcgtctatgttttgtag |
494 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25788305 |
gaccacaagtgtaaaaccaataaacaaaagtttggattcactttatgttgtaaagtaaaattttaagaaacgctgttatcgtctatgttttgtag |
25788211 |
T |
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