View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_17 (Length: 492)
Name: NF3090_low_17
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 38824184 - 38824365
Alignment:
| Q |
13 |
aatatatgaaaagtaaaatatactagcttctatccattgtgacagtaaaacaacatagctgcaaaaatagtgcaatggatagacaaattcatcatattcg |
112 |
Q |
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| T |
38824184 |
aatatatgaaaagtaaaatatactagcttctatccattgtgacagtaaagcaacatagctgcaaaaatagtgcaatggatagacaaattcatcatattcg |
38824283 |
T |
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| Q |
113 |
ttctatcaaaatccatactaaaatagaaaggttttgatgagagtaattttcaccaatacagcacaaaacattgcaggcaggc |
194 |
Q |
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| T |
38824284 |
tcctatcaaaatccatactaaaatagaaaggttttgatgagagtaattttcaccaatacagcacaaaacattgcagacaggc |
38824365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 311 - 473
Target Start/End: Original strand, 38824507 - 38824660
Alignment:
| Q |
311 |
aaaaataatttccaattaacacatatctttatttacaaagcatttaaaaaagtagtaaacatgaaatcgaagggaacattgttgagtgacccaattggta |
410 |
Q |
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| T |
38824507 |
aaaaattatttccaattaacacatatctttatttacaaagcatttaaaaaagtagtaaacatgaaatcgaagggaacattgttgagtgacccaattggta |
38824606 |
T |
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| Q |
411 |
aaattgagagaataacaaattttttaacctttggaaggtgaaatgagagaaccacagtagtat |
473 |
Q |
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| T |
38824607 |
aaattgagagaataac---------aacctttggaaggtgaaatgagagaaccacagtagtat |
38824660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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