View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_19 (Length: 464)
Name: NF3090_low_19
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_19 |
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| [»] scaffold0088 (1 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 67 - 399
Target Start/End: Original strand, 48093 - 48426
Alignment:
| Q |
67 |
gaattgtgtaaaataaatttacactattacaaacataaacaatgtaattaatannnnnnn-cttcgcaggcaagaatttaaatgacccacatgtgatagg |
165 |
Q |
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| T |
48093 |
gaattgtgtaaaataaatttacactattacaaacataaacaatgtaattaatattttttttcttcgcaggcaagaatttaaacgacccacatgtgatagc |
48192 |
T |
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| Q |
166 |
tgatgttggtgatgtccctgtccaagatattcgagattttggagtcaaagatgacagattaacgaagttaattagagaatctgtcaagattgtgatggat |
265 |
Q |
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| T |
48193 |
tgatgttggtgatgtccctgtccaagatattcgagattttggagtcaaagatgacagattaacgaagttaattagagattctgtcaagattgtgatggat |
48292 |
T |
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| Q |
266 |
caggtatatacattgttaatatttaagacattctatttttaacaattatgttcctgtttcctggtgtttttgataaataaaaatgctagttttaaattta |
365 |
Q |
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||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48293 |
caggtgtatacattgttaatatttgagacattatatttttaacaattatgttcctgtttcctggtgtttttgataaacaaaaatgctagttttaaattta |
48392 |
T |
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| Q |
366 |
ttgtttgtaagatcaaactagaatatgattttat |
399 |
Q |
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| T |
48393 |
ttgtttgtaagatcaaactagaatatgattttat |
48426 |
T |
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