View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_21 (Length: 461)
Name: NF3090_low_21
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 5374314 - 5374757
Alignment:
| Q |
8 |
cagcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattct |
107 |
Q |
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| T |
5374314 |
cagcagagattctatacacatacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattct |
5374413 |
T |
|
| Q |
108 |
cgatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaa |
207 |
Q |
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| T |
5374414 |
cgatgttatacctgaactcagataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaa |
5374513 |
T |
|
| Q |
208 |
caaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaag |
307 |
Q |
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| T |
5374514 |
caaagtcaagtaatcattggtattcttgacactggtatatggccagagctaaaaagcttagatgacacaggactaggtccaataccaagtaattggaaag |
5374613 |
T |
|
| Q |
308 |
gtgtatgtgaaactggtaacaacatgaattcgtcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtcc |
407 |
Q |
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| T |
5374614 |
gtgtatgtgaaactggtaacaacatgaattcatcacactgcaacaaaaaactcataggtgcaaggtttttcttaaaagggtatgaagcagcacttggtcc |
5374713 |
T |
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| Q |
408 |
aatagatgaaacaacagaatcaaaatcagctagagatgatgatg |
451 |
Q |
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| T |
5374714 |
aatagatgaaacaacagaatcaaaatcagctagagatgatgatg |
5374757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 281
Target Start/End: Complemental strand, 47368240 - 47367987
Alignment:
| Q |
28 |
tacaaacacatagctcatggatactccacaagactaactaaccaagaagccgaaacactttcaaaacagcccggaattctcgatgttatacctgaactca |
127 |
Q |
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|||||||| |||||||||| | ||||||||| ||||||| |||||||| || ||| |||| || || ||||||||| ||||| ||||| ||| |
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| T |
47368240 |
tacaaacatgtagctcatggcttctccacaaggctaactactcaagaagcagacttactcacaaagcaaccgggaattctctcggttatccctgatgtca |
47368141 |
T |
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| Q |
128 |
gataccaacttcacacaacaagaacaccacagttccttggtttgccaaaaacaaacactcttttacctcactctagacaacaaagtcaagtaatcattgg |
227 |
Q |
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| T |
47368140 |
gatacgagcttcacacaactcgaacaccagagttcctcggattggagaaaacaatcactcttttaccgtcctctggaaaacaaagtgaggtgattgttgg |
47368041 |
T |
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| Q |
228 |
tattcttgacactggtatatggccagagctaaaaagcttagatgacacaggact |
281 |
Q |
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| T |
47368040 |
agtaattgacacaggtgtatggcctgaactaaaaagcttcgatgacactggact |
47367987 |
T |
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