View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_22 (Length: 461)
Name: NF3090_low_22
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 22234059 - 22233599
Alignment:
| Q |
1 |
ggcaagtaaagccaatgtggttgtgacttttggtcttaaactgttagagtcttggagatagagtgagaaatagtgtatgtgtgttgggtggaggggacag |
100 |
Q |
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| T |
22234059 |
ggcaagtaaagccaatgtggttgtgacttttggtcttaaactgttagagtcttggagatagagtgagaaatagtgtatgtgtgttgggtggaggggacag |
22233960 |
T |
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| Q |
101 |
gcaaagacagtacagaaccaacccttccccacattcactctcctttgctttttcccattttcattgtttacttacacgaacaaagatatcaaacacgaca |
200 |
Q |
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| T |
22233959 |
gcaaagacagtagagaaccaacccttccccacattcactctcctttgctttttcccatttacattgtttacttacacagacaaagatatcaaacacgatg |
22233860 |
T |
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| Q |
201 |
ctgacacttatacatcaatatcgataataatttgagaaaatatttattttaaaagtaaacaatgtgttggtgtcaaagactgttacatgttagacattgg |
300 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22233859 |
ctgacacttatacgtcaatatcgataataatttgaggaaatatttattttaaaagtaaacaatgtgttggtgtcaaagactgttacatgttagacattgg |
22233760 |
T |
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| Q |
301 |
atacacattcgatataaagtataagtacttcataatgaagtgtcggctaagtagtgaaactttgtcactataactacaaagaataaagttcaattagaaa |
400 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
22233759 |
atacacattcgatccaaagtataagtacttcataatgcagtgtcggctaagtggtgaaactttgacattataactacaaagaataaagttcaattagaaa |
22233660 |
T |
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| Q |
401 |
caattataaaacccgttactattaaattattgagatttcgtgtaaaagacaagtgaaattt |
461 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22233659 |
caattataaagcccgttactattaaattattgagatttggtgtaaaagacaagtgaaattt |
22233599 |
T |
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