View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_23 (Length: 459)

Name: NF3090_low_23
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_23
NF3090_low_23
[»] chr7 (1 HSPs)
chr7 (1-192)||(6110483-6110672)
[»] chr5 (2 HSPs)
chr5 (329-389)||(27762777-27762837)
chr5 (327-389)||(31546727-31546789)
[»] chr4 (1 HSPs)
chr4 (327-376)||(5817962-5818011)
[»] chr6 (1 HSPs)
chr6 (337-379)||(17398702-17398744)
[»] chr3 (3 HSPs)
chr3 (327-379)||(15004081-15004133)
chr3 (214-283)||(32742303-32742373)
chr3 (347-415)||(29029229-29029297)
[»] chr2 (1 HSPs)
chr2 (327-379)||(28853073-28853125)
[»] chr1 (2 HSPs)
chr1 (327-409)||(49384661-49384741)
chr1 (327-359)||(5803759-5803791)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6110483 - 6110672
Alignment:
Q  1 tcatgaccatcaaacggaccctaaaaattgtgtgtgtgatatttattttctgtcactgttattttgttctaaaattggttctgacttgttgtctatctaa 100  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  6110483 tcatgaccatcaaacggaccctaaaaattacgtgtgtgatatttattttctgtcactgttattttgttctaa--ttggttctgacttgttgtctatctaa 6110580  T
Q  101 ttacacgggtgcggggaaaattatttcgcatttaagagattatttagttttcttttttcttccaacaatgtggtatcaagagccttgattgg 192  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||    
T  6110581 ttacacgggtgtggggaaaattatttcgcattgaagagattatttagtttttttttttcttccaacaaagtggtatcaagagtcttgattgg 6110672  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 27762777 - 27762837
Alignment:
Q  329 tttggagagagatagatacaaaaaagagataatggatattttaattaaatgtgttccacca 389  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| |||||    
T  27762777 tttggagagagatagatacaaaaaagagatggtggatattttaattaaatgggtttcacca 27762837  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 31546789 - 31546727
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagataatggatattttaattaaatgtgttccacca 389  Q
    |||||||||||||||| | | ||||||||| || || |||||||||||||||| || ||||||    
T  31546789 aatttggagagagataaacataaaaaagaggtagtgaatattttaattaaatgggtcccacca 31546727  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 5818011 - 5817962
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagataatggatattttaattaa 376  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  5818011 aatttggagagagatagacacaaaaaagagataatgaatattttaattaa 5817962  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 17398702 - 17398744
Alignment:
Q  337 gagatagatacaaaaaagagataatggatattttaattaaatg 379  Q
    |||||||| |||||||||||||| |||||||||||||||||||    
T  17398702 gagatagacacaaaaaagagatagtggatattttaattaaatg 17398744  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 15004081 - 15004133
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagataatggatattttaattaaatg 379  Q
    |||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||    
T  15004081 aatttgaagagaaatagacacaaaaaagagatagtggatattttatttaaatg 15004133  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 32742303 - 32742373
Alignment:
Q  214 tttaaatggagaaagattcaatgccaaatatgatta-gttcaactcttctaattatccagtttggaagact 283  Q
    |||||||||||||| |||||   ||||||||| ||| | |||||||||||||||||||| |||| ||||||    
T  32742303 tttaaatggagaaaaattcataaccaaatatgtttaagctcaactcttctaattatccactttgcaagact 32742373  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 29029229 - 29029297
Alignment:
Q  347 caaaaaagagataatggatattttaattaaatgtgttccaccaatattgattacattatacttcttttt 415  Q
    ||||||||||| | || |||||||||||||||| ||| |||||  ||| ||||| |||||||| |||||    
T  29029229 caaaaaagagacagtgaatattttaattaaatgagtttcaccatcattaattactttatactttttttt 29029297  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 28853125 - 28853073
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagataatggatattttaattaaatg 379  Q
    |||||||| ||||||||| | |||||||||||| | |||||||||||||||||    
T  28853125 aatttggaaagagatagacataaaaaagagatagtagatattttaattaaatg 28853073  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 409
Target Start/End: Original strand, 49384661 - 49384741
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagataatggatattttaattaaatgtgttccaccaatattgattacattatactt 409  Q
    ||||| ||||||||||||  ||||||||||||| || |||||||||||||||| || || |||  ||| ||||| ||||||||    
T  49384661 aatttagagagagataga--caaaaaagagatagtgaatattttaattaaatgagtccctccatcattaattactttatactt 49384741  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 5803759 - 5803791
Alignment:
Q  327 aatttggagagagatagatacaaaaaagagata 359  Q
    |||||||||||||||| ||||||||||||||||    
T  5803759 aatttggagagagataaatacaaaaaagagata 5803791  T

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