View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_25 (Length: 441)
Name: NF3090_low_25
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 30705620 - 30705208
Alignment:
| Q |
13 |
aatatcagcattactagtcgagttagatctgctagacacaagactatattatttgttctatcttataactatgccatttgacattttaattttaaaagtt |
112 |
Q |
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| T |
30705620 |
aatatcagcattactagtcgagttagatctgctagacacaagactatattatttgttctatcttataactatgccatttgacattttaattttaaaagtt |
30705521 |
T |
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| Q |
113 |
ttcttagcaataacaactatcacagaaatttttagtaatataacacttataaacaagttattaaactcttgcttagtagcttgattattctaaaaagcgc |
212 |
Q |
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| T |
30705520 |
ttcttagcaataacaactatcacagaaatttttagtaatataacacttataaacaagttattaaactcttgcttagtagcttgattattctaaaaagcgc |
30705421 |
T |
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| Q |
213 |
ataattaaaagaaatatcacttgcaagagtttcttaattcatgtttttctataagctacaagtacaatggattcttaatcaaaatgcttatggcattata |
312 |
Q |
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| T |
30705420 |
ataattaaaagaaatatcacttgtaagagtttcttaattcatgtttttctataagctacaagtagaatggattcttaatcaaaatgcttatggcattata |
30705321 |
T |
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| Q |
313 |
agatttcaacaac--nnnnnnnnntgtagaaaagcaaaatagagtttaacagaactagtcaagttttgaaacaaataaatcaaactatagtaaattaatt |
410 |
Q |
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| T |
30705320 |
agatttcaacaacaaaaaaaaaaatgtagaaatgcaaaatagagtttaacagaactagtcaagttttgaaacaaataaatcatactatagtaaattaatt |
30705221 |
T |
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| Q |
411 |
agtacttacatgt |
423 |
Q |
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| T |
30705220 |
agtacttacatgt |
30705208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 30666022 - 30665962
Alignment:
| Q |
357 |
taacagaactagtcaagttttgaaacaaataaatcaaactatagtaaattaattagtacttacat |
421 |
Q |
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||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
30666022 |
taacagaactagtaaagttctgaaacaaat----caaactatagttaattaattagtacttacat |
30665962 |
T |
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