View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3090_low_27 (Length: 435)
Name: NF3090_low_27
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 1134084 - 1133668
Alignment:
| Q |
1 |
gagtaatttggtcttataaattgataaatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatattnnnnnnnntg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1134084 |
gagtaatttggtcttataaattgatagatactattagaatttctgtctaagctaaaaatatagaatatcggtttaagctaaaaatatattaaaaaaaatg |
1133985 |
T |
|
| Q |
101 |
ggagacataataacatgttaaattgataatttcataagtgtatannnnnnngtcaataacttcataaatgtatctaaaactaagtgaataatgttataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1133984 |
ggagacataataacatgttaaattgataatttcataagtgtatatttttttgtcaataacttcataaatgtatctaaaactaagtgaatagtgttataga |
1133885 |
T |
|
| Q |
201 |
cacatttgataaatttagataaagagaatgttctttttaagaactcgtaaatagcctaagaatcaattaattagagtgatcaatctcatcgtctattaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1133884 |
cacatttgataaatttagataaagagaatgttctttttaagaacccgtaaatagcctaagaatcaattaattagagtgatcaatctcatcgtctattaac |
1133785 |
T |
|
| Q |
301 |
aatacatcaacttaagtcaaacaattttttgtatgaaccaatcaaacacatgaattgttgacatccggatgatccaaatttaaaagttagaaaggaacat |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1133784 |
aatacatcaacttaagtcaaacaaattttcgtatgaaccaatcaaatacatgaattgttgacatccggatgatccaaatttaaaagttagaaaggaacat |
1133685 |
T |
|
| Q |
401 |
gctattaagccccatgt |
417 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1133684 |
gctattaagccccatgt |
1133668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University