View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_28 (Length: 433)
Name: NF3090_low_28
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 27356642 - 27356245
Alignment:
| Q |
20 |
ggtctgtagacaaagtggtaaacaccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacat |
119 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27356642 |
ggtctatagacaaagtggtaaacaccactgaaactcacacacactgcaatgtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcggcat |
27356543 |
T |
|
| Q |
120 |
tgccaattaagctaggctttatagacaaattttgcatattttatacaagcatactttatataagcctttgcatgttcattaa-ggcttcttgcaaagttt |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27356542 |
tgccaattaagctaggctttacagacaaattttgcatattttatacaagcatactttatataagcctttgcatgttcattaaaggcttcttgcaaagttt |
27356443 |
T |
|
| Q |
219 |
aatcatatcaccaattaagttcaaagcaggtcttcaatcagactctaggataatgaacatgtagtcaagccagctgcaagcccttaaaaatagccattaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356442 |
aatcatatcaccaattaagttcaaagcaggtcttcaataagactctaggataatgaacatgtagtcaagccagctgcaagcccttaaaaatagccattaa |
27356343 |
T |
|
| Q |
319 |
ttaagcatatcaaaattagtagttatggcataagaacctgagaaaccttgaagccattcactatgattgtttctcaaatgactgccatagcttgtttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27356342 |
ttaagcatatcaaaattagtagttatggcataagaacctgagaaaccttgaagccattcactatgattgtttctcaaatgactgccatagcttgtttt |
27356245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 2107309 - 2107357
Alignment:
| Q |
97 |
gtccaacctaacaatttcgacattgccaattaagctaggctttatagac |
145 |
Q |
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| T |
2107309 |
gtccaacctaacaatatcgacattgccaattaagctaggccttacagac |
2107357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 38711566 - 38711467
Alignment:
| Q |
21 |
gtctgtagacaaagtggtaaacaccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacatt |
120 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||| || | ||||| || |||||||||| |||||| ||| ||| |||||||||||||||| |
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| T |
38711566 |
gtctgtacacaaagtagtaaacaccactaaaactcacacatactgtaaggttttagattcgaacccaagtaaagacgttcaatttaacaatttcgacatt |
38711467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 1419360 - 1419249
Alignment:
| Q |
25 |
gtagacaaagtggtaaacaccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgcca |
124 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||| ||| ||| |||| |||| || |||||||| |||||||||||||| ||||||||| |
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| T |
1419360 |
gtagacgaagtggtaaacaccattgaaactcacacacactgcattgtctcgggttc--acccgagtgaaggcgtctaacctaacaatttcaacattgcca |
1419263 |
T |
|
| Q |
125 |
attaagctaggctt |
138 |
Q |
| |
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|| |||||||||| |
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| T |
1419262 |
gttgagctaggctt |
1419249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 35979104 - 35979202
Alignment:
| Q |
42 |
caccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggcttta |
140 |
Q |
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|||||| |||||||| |||| | |||||||| |||| ||| ||||| ||||||| ||||||||||||||| |||||||| || |||| ||||||| |
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| T |
35979104 |
caccactgaaactcatacactctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggcttta |
35979202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 36000516 - 36000614
Alignment:
| Q |
42 |
caccaccgaaactcacacacaccgcaaggtcatatgttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggcttta |
140 |
Q |
| |
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|||||| |||||||| |||| | |||||||| |||| ||| ||||| ||||||| ||||||||||||||| |||||||| || |||| ||||||| |
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| T |
36000516 |
caccactgaaactcatacactctgcaaggtctcgggttcaaactcaggtgaaggcgttcaacctaacaatttcatcattgccagttgagcttggcttta |
36000614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 45312274 - 45312205
Alignment:
| Q |
77 |
gttcgaacccaggtaaaggcgtccaacctaacaatttcgacattgccaattaagctaggctttatagaca |
146 |
Q |
| |
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||||||||| ||| |||| ||||||||||||||||||| ||||| || || ||||| |||||| ||||| |
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| T |
45312274 |
gttcgaacctgggtgaaggtgtccaacctaacaatttcggcattgtcagttgagctatgctttacagaca |
45312205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 37190832 - 37190790
Alignment:
| Q |
21 |
gtctgtagacaaagtggtaaacaccaccgaaactcacacacac |
63 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||| |
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| T |
37190832 |
gtctctagacaaagtggtaaacaccactaaaactcacacacac |
37190790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14345368 - 14345408
Alignment:
| Q |
20 |
ggtctgtagacaaagtggtaaacaccaccgaaactcacaca |
60 |
Q |
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||||||||||||||| ||||||||||| |||||||||||| |
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| T |
14345368 |
ggtctgtagacaaagaggtaaacaccattgaaactcacaca |
14345408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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