View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_29 (Length: 429)

Name: NF3090_low_29
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_29
NF3090_low_29
[»] chr2 (31 HSPs)
chr2 (18-419)||(9321585-9321986)
chr2 (130-346)||(10372588-10372804)
chr2 (131-353)||(9292638-9292857)
chr2 (243-419)||(9329418-9329598)
chr2 (154-400)||(9060271-9060517)
chr2 (195-400)||(8572675-8572879)
chr2 (195-398)||(9316793-9316999)
chr2 (180-353)||(10353901-10354074)
chr2 (236-353)||(10336623-10336740)
chr2 (241-353)||(10348620-10348732)
chr2 (244-353)||(12018134-12018243)
chr2 (240-353)||(7114865-7114978)
chr2 (236-353)||(9275335-9275452)
chr2 (236-353)||(9283394-9283511)
chr2 (236-353)||(12005385-12005502)
chr2 (195-320)||(14551091-14551215)
chr2 (243-342)||(9357935-9358034)
chr2 (244-353)||(12011813-12011922)
chr2 (244-353)||(7612716-7612825)
chr2 (244-323)||(9365415-9365494)
chr2 (291-350)||(8578748-8578807)
chr2 (39-155)||(9329229-9329339)
chr2 (248-353)||(11986745-11986850)
chr2 (39-91)||(7115100-7115152)
chr2 (18-85)||(9357789-9357856)
chr2 (42-85)||(10353754-10353797)
chr2 (50-146)||(9283589-9283679)
chr2 (48-85)||(10348421-10348458)
chr2 (253-353)||(17565334-17565434)
chr2 (29-92)||(10372481-10372544)
chr2 (52-85)||(8572959-8572992)
[»] chr3 (3 HSPs)
chr3 (180-353)||(37463278-37463451)
chr3 (18-92)||(37463107-37463181)
chr3 (279-353)||(39428733-39428807)
[»] scaffold0667 (2 HSPs)
scaffold0667 (226-353)||(5261-5388)
scaffold0667 (54-86)||(5122-5154)
[»] chr4 (3 HSPs)
chr4 (180-353)||(26575635-26575808)
chr4 (236-320)||(561982-562066)
chr4 (29-85)||(26575493-26575549)
[»] chr8 (1 HSPs)
chr8 (222-353)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (211-338)||(29452586-29452713)
chr1 (195-338)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (245-353)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 9321585 - 9321986
Alignment:
Q  18 gttaggatgattgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacagga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321585 gttaggatgattgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacagga 9321684  T
Q  118 gtgatgttggtggtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgtt 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321685 gtgattttggtggtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgtt 9321784  T
Q  218 gaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9321785 gaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattg 9321884  T
Q  318 gagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttctg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9321885 gagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttgtg 9321984  T
Q  418 tg 419  Q
    ||    
T  9321985 tg 9321986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 130 - 346
Target Start/End: Original strand, 10372588 - 10372804
Alignment:
Q  130 gtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatc---atcgatttggagttggtagagatcgaatttgtgttgaatgatta 226  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| |||||| |||||    
T  10372588 gtgaaaggatggttgagtggaatcctc---gatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggatta 10372684  T
Q  227 aggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtga 326  Q
    |||||||| |||||||||||| ||| |||||||||||||| | ||| ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||||    
T  10372685 aggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtga 10372784  T
Q  327 ttttaccggtaagcgggaga 346  Q
    ||||||||||||||||||||    
T  10372785 ttttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 131 - 353
Target Start/End: Original strand, 9292638 - 9292857
Alignment:
Q  131 tgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaagga 230  Q
    |||||||||||||||||||||| |||   || || ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  9292638 tgaaaggatggttgagtggaataatc---gacttggagaaatcatcatcatcatcgatttggagttggtagagatcgaatttgtgtcgaaggattaagga 9292734  T
Q  231 tcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgatttt 330  Q
    |||  |||||||||||||||| ||||||||  |||||  ||| |||||||||| ||||||||||||||| ||| |||||||||||  |||||||||||||    
T  9292735 tcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgatttt 9292834  T
Q  331 accggtaagcgggagaggatttc 353  Q
    || |||| |||||||| ||||||    
T  9292835 actggtacgcgggagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 243 - 419
Target Start/End: Original strand, 9329418 - 9329598
Alignment:
Q  243 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 342  Q
    ||||||||| ||||||||  |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgg 9329517  T
Q  343 gagaggatttcctccaacaattccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttctgtg 419  Q
    ||||||||||||   |||||||||||| || ||||||||| |||||||    |||||||||||||||||||||||| ||||    
T  9329518 gagaggatttccgttaacaattccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtg 9329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 154 - 400
Target Start/End: Complemental strand, 9060517 - 9060271
Alignment:
Q  154 atcatggatttagagaaatcatcatgatcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttga 250  Q
    ||||| |||||||||||||||||||   |||||| ||||||||||||||||||| |||||||| ||| |||||   ||||| |||||| |||   |||||    
T  9060517 atcattgatttagagaaatcatcat---catcgacttggagttggtagagatcggatttgtgtcgaaggattataaatcgattgaggggattatttttga 9060421  T
Q  251 gatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 350  Q
    | | ||||||  |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| |||    
T  9060420 ggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagat 9060321  T
Q  351 ttcctccaacaattccggcggaggaacatcactcgccattggaaggaagg 400  Q
    |||  | |  | |||||||||| ||||||||  |||||||||||||||||    
T  9060320 ttcggcaagtatttccggcggaagaacatcagccgccattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 195 - 400
Target Start/End: Complemental strand, 8572879 - 8572675
Alignment:
Q  195 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 294  Q
    |||||||| |||| | ||| || ||||||||||||| ||| |||||||||||||||| ||||||||| |||||| ||| ||||||||||| |||||||||    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  295 gatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattggaa 394  Q
    ||||| ||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||    |  | ||||| |||| ||||||||| |||||||||||    
T  8572779 gattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactatttccgacggaagaacatcacccgccattggaa 8572681  T
Q  395 ggaagg 400  Q
    ||||||    
T  8572680 ggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 195 - 398
Target Start/End: Original strand, 9316793 - 9316999
Alignment:
Q  195 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatt---tttgagatgaaggttgatgaagtggtgcgaatcgattatggattta 291  Q
    ||||||||| ||| ||||||  |||| ||||||||||||| ||||||||||   |||||| |||||||||||||||| ||| ||||| ||||  ||||||    
T  9316793 ttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagattta 9316892  T
Q  292 agtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaattccggcggaggaacatcactcgccattg 391  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| |||||| ||||||  | |  | |||||||||| || | |||  ||||||||    
T  9316893 agtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagtatttccggcggaagaccgtcagccgccattg 9316992  T
Q  392 gaaggaa 398  Q
    |||||||    
T  9316993 gaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 10353901 - 10354074
Alignment:
Q  180 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 279  Q
    |||||||||||  | |||||||| ||||||||||  | |||  ||||||||| || || |||||||| |||| |||||||||||||| | ||  ||||||    
T  10353901 atcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaatttctgaggtgaaggttgatgaatttgttggaatcg 10354000  T
Q  280 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 353  Q
    |||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  10354001 attagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 10354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 10336623 - 10336740
Alignment:
Q  236 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 335  Q
    ||||||||||||  || |||||||||||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  10336623 tgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccgg 10336722  T
Q  336 taagcgggagaggatttc 353  Q
    ||| ||||||| ||||||    
T  10336723 taaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 10348620 - 10348732
Alignment:
Q  241 gaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagc 340  Q
    |||||||| || |||||||||||||| | | | |||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagc 10348719  T
Q  341 gggagaggatttc 353  Q
    |||||| ||||||    
T  10348720 gggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 12018243 - 12018134
Alignment:
Q  244 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 343  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||    
T  12018243 tttttgagttgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcggg 12018144  T
Q  344 agaggatttc 353  Q
    ||| ||||||    
T  12018143 agaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 353
Target Start/End: Complemental strand, 7114978 - 7114865
Alignment:
Q  240 ggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaag 339  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||  ||| |||| |    
T  7114978 ggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtagg 7114879  T
Q  340 cgggagaggatttc 353  Q
    || |||| ||||||    
T  7114878 cgagagaagatttc 7114865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 9275335 - 9275452
Alignment:
Q  236 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 335  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||    
T  9275335 tgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactgg 9275434  T
Q  336 taagcgggagaggatttc 353  Q
    ||| ||||||| ||||||    
T  9275435 taaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 9283511 - 9283394
Alignment:
Q  236 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 335  Q
    |||||||| ||||||| |||||||||||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||    
T  9283511 tgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactgg 9283412  T
Q  336 taagcgggagaggatttc 353  Q
    ||||| ||||| ||||||    
T  9283411 taagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 12005502 - 12005385
Alignment:
Q  236 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccgg 335  Q
    |||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| |||||||||||| |   ||    
T  12005502 tgagagaattttttagatgaaggttggtgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggagg 12005403  T
Q  336 taagcgggagaggatttc 353  Q
    ||||||||||| ||||||    
T  12005402 taagcgggagaagatttc 12005385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 14551091 - 14551215
Alignment:
Q  195 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 294  Q
    ||||||||||| | | |||||| ||| ||||||||| | | ||||||||||||| || ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  295 gatttagaagttgatcggaattggag 320  Q
    ||||| ||||||||||||||||||||    
T  14551190 gattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 9357935 - 9358034
Alignment:
Q  243 atttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 342  Q
    ||||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 12011922 - 12011813
Alignment:
Q  244 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 343  Q
    |||||||| ||||| ||| |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    |||||||||    
T  12011922 tttttgaggtgaagattggtgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcggg 12011823  T
Q  344 agaggatttc 353  Q
    ||| ||||||    
T  12011822 agaagatttc 12011813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 7612716 - 7612825
Alignment:
Q  244 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggg 343  Q
    |||||||| ||||||||  |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||| |    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgag 7612815  T
Q  344 agaggatttc 353  Q
    ||||||||||    
T  7612816 agaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 9365415 - 9365494
Alignment:
Q  244 tttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 323  Q
    ||||||||||| |||||| |||||  ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365415 tttttgagatggaggttggtgaaggtgtgagaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  291 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 350  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 9329229 - 9329339
Alignment:
Q  39 ttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaagga 138  Q
    |||||| | |||||| || | ||||||||| || |||||||||||| ||||| | |||      ||||| ||||||||||  ||||||||| ||||||||    
T  9329229 ttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctg------ttacgcgtgacaggagcaatgttggtgctgaaagga 9329322  T
Q  139 tggttgagtggaatcat 155  Q
    |||||||||||||||||    
T  9329323 tggttgagtggaatcat 9329339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 11986850 - 11986745
Alignment:
Q  248 tgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagag 347  Q
    |||| ||||| ||| |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| |||||||||||| |    ||||||||||||     
T  11986850 tgaggtgaagattggtgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaa 11986751  T
Q  348 gatttc 353  Q
    ||||||    
T  11986750 gatttc 11986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 7115152 - 7115100
Alignment:
Q  39 ttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatgg 91  Q
    |||||| | |||||||||||||||||||||||| |||||||||||| ||||||    
T  7115152 ttggccattggagatggcgaggaggccgttacatgaaccgataagatccatgg 7115100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 9357789 - 9357856
Alignment:
Q  18 gttaggatgattgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagag 85  Q
    |||||||||  ||||||| | || ||| | |||||||||||||||||||||||| |||||||||||||    
T  9357789 gttaggatgcctgaaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagag 9357856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 10353754 - 10353797
Alignment:
Q  42 gccgtgggagatggcgaggaggccgttacaggaaccgataagag 85  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  10353754 gccgtgggacatggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 9283679 - 9283589
Alignment:
Q  50 agatggcgaggaggccgttacaggaaccgataagagccatggttctggttctattacgtgtgacaggagtgatgttggtggtgaaaggatggttgag 146  Q
    |||||||||||||||||||||| ||||| ||||||||| || | |||      ||| | |||| ||||  |||||||||||||||||||||||||||    
T  9283679 agatggcgaggaggccgttacatgaaccaataagagccttgatgctg------ttaagcgtgaaaggatcgatgttggtggtgaaaggatggttgag 9283589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 10348421 - 10348458
Alignment:
Q  48 ggagatggcgaggaggccgttacaggaaccgataagag 85  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10348421 ggagatggcgaggaggccgttacatgaaccgataagag 10348458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 17565434 - 17565334
Alignment:
Q  253 tgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggattt 352  Q
    ||||||||| ||||||  || ||||| ||||   ||||||||||||| || |||||||||| | |||| || |||| ||| |||||||| ||||||||||    
T  17565434 tgaaggttggtgaagttatgggaatcaattaaaaatttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggattt 17565335  T
Q  353 c 353  Q
    |    
T  17565334 c 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 10372481 - 10372544
Alignment:
Q  29 tgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggt 92  Q
    ||||||| | || ||||| | |||||||||||||||||||||| ||||||||| ||| ||||||    
T  10372481 tgaaagcgaatttgccgttgcagatggcgaggaggccgttacatgaaccgatacgagtcatggt 10372544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 8572992 - 8572959
Alignment:
Q  52 atggcgaggaggccgttacaggaaccgataagag 85  Q
    |||||||||||||||||||| |||||||||||||    
T  8572992 atggcgaggaggccgttacatgaaccgataagag 8572959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 37463278 - 37463451
Alignment:
Q  180 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 279  Q
    ||||||||||||||||||||||| |||| | |||| | ||||||||| |||| || |||||| |||||||||||||||||||||||||| ||| ||||||    
T  37463278 atcatcgatttggagttggtagatatcggagttgtttcgaatgattacggattgattgaggggatttttgagatgaaggttgatgaagttgtgagaatcg 37463377  T
Q  280 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 353  Q
    ||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  37463378 attaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttc 37463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 37463107 - 37463181
Alignment:
Q  18 gttaggatgattgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatggt 92  Q
    |||||||||  ||||||| | |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||    
T  37463107 gttaggatgcgtgaaagcgatttggccattggagatagcgaggaggccgttacatgaaccgataagagccatggt 37463181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 39428733 - 39428807
Alignment:
Q  279 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 353  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 226 - 353
Target Start/End: Original strand, 5261 - 5388
Alignment:
Q  226 aaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtg 325  Q
    ||||||| | |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5261 aaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtg 5360  T
Q  326 attttaccggtaagcgggagaggatttc 353  Q
    ||||||||||||||||||||| ||||||    
T  5361 attttaccggtaagcgggagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 5122 - 5154
Alignment:
Q  54 ggcgaggaggccgttacaggaaccgataagagc 86  Q
    |||||||||||||||||| ||||||||||||||    
T  5122 ggcgaggaggccgttacatgaaccgataagagc 5154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 26575635 - 26575808
Alignment:
Q  180 atcatcgatttggagttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcg 279  Q
    ||||| |||||  |||||||||| ||||||||||  | ||| ||||||||||||| || |||||||| |||| |||||||||||||| | ||  ||||||    
T  26575635 atcattgatttcaagttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcg 26575734  T
Q  280 attatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 353  Q
    |||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  26575735 attaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttc 26575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 561982 - 562066
Alignment:
Q  236 tgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 320  Q
    ||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||||  |||| ||| || |||||||| ||||    
T  561982 tgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagccattttgaacttaatcggaatcggag 562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 26575493 - 26575549
Alignment:
Q  29 tgaaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagag 85  Q
    ||||||||| |  ||||||||| |||||||||||||||||||| |||||||||||||    
T  26575493 tgaaagccattacgccgtgggacatggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 41966073 - 41965942
Alignment:
Q  222 gattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggaga 321  Q
    ||||||||||||| ||||||| ||| |||| |||||||||||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||    
T  41966073 gattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggaga 41965974  T
Q  322 agtgattttaccggtaagcgggagaggatttc 353  Q
    | |||||||||||||||  |||||| ||||||    
T  41965973 actgattttaccggtaatagggagaagatttc 41965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 29452713 - 29452586
Alignment:
Q  211 ttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatc 310  Q
    |||||| ||| ||||||||| ||| |||||||||||| ||| ||||| |||||||||| ||| |||||||||| ||||| ||||||||| || ||||| |    
T  29452713 ttgtgtcgaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttgaggttgaac 29452614  T
Q  311 ggaattggagaagtgattttaccggtaa 338  Q
    ||||| |||| || |||| |||||||||    
T  29452613 ggaatcggaggagggattgtaccggtaa 29452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 195 - 338
Target Start/End: Complemental strand, 29467203 - 29467060
Alignment:
Q  195 ttggtagagatcgaatttgtgttgaatgattaaggatcgactgagggaatttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagt 294  Q
    |||||||| |||| | |||||| ||| ||||||| | ||| |||||||||||  ||| ||||| |||||||||| ||| |||||||||| ||||| ||||    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  295 gatttagaagttgatcggaattggagaagtgattttaccggtaa 338  Q
    ||||| || ||||| |||||| |||| || |||| |||||||||    
T  29467103 gattttgaggttgaacggaatcggaggagggattgtaccggtaa 29467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 36225571 - 36225679
Alignment:
Q  245 ttttgagatgaaggttgatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcggga 344  Q
    ||||||| ||||| ||  |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| || ||||  ||  ||||||||||    
T  36225571 ttttgaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcggga 36225670  T
Q  345 gaggatttc 353  Q
    |||||||||    
T  36225671 gaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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