View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_30 (Length: 424)
Name: NF3090_low_30
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 182 - 414
Target Start/End: Original strand, 27356659 - 27356891
Alignment:
| Q |
182 |
atatgcagaatttggagctgccctcaattatttgtttggggagggtcttggaattcagataactagaaaggctaatacttcactccttgggaaacaagtt |
281 |
Q |
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| T |
27356659 |
atatgcagaatttggagctgccctcaattatttgtttggggagggtcttggaattcagataactagaaaggctaatacttcactccttgggaaacaagtt |
27356758 |
T |
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| Q |
282 |
agggatattatgcataatctccacaaaatatgtgttccattgcgtgcttctaagtacttgactgatccaatttcttggagctggcttggatataactgat |
381 |
Q |
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| T |
27356759 |
agggatattatgcataatctccacaaaatatgtgttccattgcgtgcttctaagtacttgactgatccaatttcttggagctggcttggatataactgat |
27356858 |
T |
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| Q |
382 |
gatacttctcaacaatttcactcctatgctact |
414 |
Q |
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| T |
27356859 |
gatacttctcaacaatttcactcctatgctact |
27356891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 16800559 - 16800710
Alignment:
| Q |
11 |
cataggtcatatgaagaaattcagccatannnnnnnctctcgtagaagttagaactatacaattatgtgatcactttatattaaaaattcaaagcttatt |
110 |
Q |
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| T |
16800559 |
cataggtcatatgaagaaattcagccatatttttttctctcgtagaagttagaactatacaattatgtgatcactttatattaaaaattcaaagcttatt |
16800658 |
T |
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| Q |
111 |
ttacatcaattaaaacttttaccacatatggagttacaagaacttttgtacc |
162 |
Q |
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| T |
16800659 |
ttacatcaattaaaacttttaccacatatggagttacaagaacttttgtacc |
16800710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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