View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_31 (Length: 417)

Name: NF3090_low_31
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_31
NF3090_low_31
[»] chr6 (15 HSPs)
chr6 (1-139)||(34281584-34281724)
chr6 (29-115)||(29152387-29152477)
chr6 (38-136)||(29012543-29012641)
chr6 (39-136)||(25319568-25319666)
chr6 (39-136)||(26149261-26149359)
chr6 (38-107)||(32745182-32745251)
chr6 (32-102)||(29149027-29149097)
chr6 (33-111)||(34278768-34278846)
chr6 (38-94)||(32961062-32961118)
chr6 (38-136)||(29299780-29299878)
chr6 (39-136)||(29131014-29131111)
chr6 (38-136)||(29136963-29137061)
chr6 (47-136)||(29123817-29123906)
chr6 (39-94)||(23223694-23223749)
chr6 (38-101)||(29144998-29145061)
[»] chr4 (2 HSPs)
chr4 (38-124)||(37897610-37897696)
chr4 (38-136)||(37895668-37895766)
[»] chr7 (4 HSPs)
chr7 (38-136)||(42446025-42446123)
chr7 (39-82)||(5393745-5393788)
chr7 (39-80)||(5442083-5442124)
chr7 (39-80)||(5451093-5451134)
[»] scaffold0054 (2 HSPs)
scaffold0054 (38-101)||(40122-40185)
scaffold0054 (38-101)||(33771-33834)
[»] scaffold0134 (1 HSPs)
scaffold0134 (38-94)||(16545-16601)
[»] chr5 (2 HSPs)
chr5 (39-85)||(40548984-40549030)
chr5 (39-87)||(32642643-32642691)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 34281584 - 34281724
Alignment:
Q  1 tgacgtcaaagaatttgtatcttaccgga--gtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtct 98  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34281584 tgacgtcaaagaatttgtatcttaccggacagtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtct 34281683  T
Q  99 tctgtggactgtactgaaggcacccaaatctacatggacgg 139  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34281684 tctgtggactgtactgaaggcacccaaatctacatggacgg 34281724  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 29152477 - 29152387
Alignment:
Q  29 agtgccaaaatgggagatatata----gcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactga 115  Q
    |||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29152477 agtgccaaaatgggagatatatatatagcctaaggagtgactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactga 29152387  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29012543 - 29012641
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||| |||| ||||||||| ||| ||||||||| ||||||||||    
T  29012543 atgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattctttggactgtattgacggcacccaagtctacatgga 29012641  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 25319666 - 25319568
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtgga-ctgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||  |||  |||||||| ||||||| | ||||||||||    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgagggcacccgagtctacatgga 25319568  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 26149359 - 26149261
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtgga-ctgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||  |||  |||||||| ||||||| | ||||||||||    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgagggcacccgagtctacatgga 26149261  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 32745251 - 32745182
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggac 107  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||| ||||| |||||    
T  32745251 atgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttctttggac 32745182  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 29149097 - 29149027
Alignment:
Q  32 gccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctg 102  Q
    ||||| ||||||||| ||||||||||  |||||||| ||||||||| || |||||||||||||||||||||    
T  29149097 gccaacatgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttctg 29149027  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 34278846 - 34278768
Alignment:
Q  33 ccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgta 111  Q
    ||||||||||||||||||||||| |  ||||| ||||||||||||||||||| || |||||||| |||| |||| ||||    
T  34278846 ccaaaatgggagatatatagcctgataagtaattcgtggagagaacttgatgctgtcatgccgtattctatggaatgta 34278768  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 32961118 - 32961062
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    |||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  32961118 atgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgcc 32961062  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29299780 - 29299878
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||| |||||||||| |||| ||||||||| ||  ||||||||||||||||| | ||||   ||  ||||||| ||||||||| ||||||||||    
T  29299780 atgggagatgtatagcctaatgagtgactcgtggaaagtgcttgatgttgacatgccttattcttctgatcgtactgagggcacccaagtctacatgga 29299878  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 29131014 - 29131111
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||||  ||  |||||||| |||||||||||||||||||||||||| | |||  | ||||||| || ||| |||||| |||| |||||    
T  29131014 tgggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgccttattcgttagactgtaatgcaggaacccaagtctatatgga 29131111  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 29136963 - 29137061
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||||  |||||| |||||||| | |||  ||||||| |||||||||||| ||||| ||||   ||| |||||||||||  ||||||||||    
T  29136963 atgggagatatatgacctaagaagtaactcctcgaggaaacttgaggttgacatgccgccttctttggatattacggaaggcacccatgtctacatgga 29137061  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 29123817 - 29123906
Alignment:
Q  47 atatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    |||||||||||| |||||||| |||||   ||||||||||||||||||| ||||| |||||  ||| || |||| |||  ||||||||||    
T  29123817 atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttctttggacactacagagggcaaccatgtctacatgga 29123906  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 23223749 - 23223694
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    |||||||||||||||||||  | ||||||||||||  ||||||| |||||||||||    
T  23223749 tgggagatatatagcctaacaattaactcgtggaggaaacttgacgttgacatgcc 23223694  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 29144998 - 29145061
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||| ||||| ||||||| ||||||  |||||||||||  |||||| ||||||    
T  29144998 atgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttct 29145061  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 37897610 - 37897696
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcaccca 124  Q
    ||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||||||||    
T  37897610 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcaccca 37897696  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 37895668 - 37895766
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||| | ||||||||||| ||||| ||||||||  ||||||||||||||||||| | |||| |||| ||||  || ||||||||| |||| |||||    
T  37895668 atgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgccttattctttggaatgtaaggagggcacccaagtctatatgga 37895766  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 42446025 - 42446123
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaaggcacccaaatctacatgga 136  Q
    ||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||| | |||| |||| |||| ||| ||||||||| ||||||||||    
T  42446025 atgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgccttattctttggaatgtattgagggcacccaagtctacatgga 42446123  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 5393788 - 5393745
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttga 82  Q
    |||||||||||||||||| |||||||||| |||||| |||||||    
T  5393788 tgggagatatatagcctacggagtaactcatggagaaaacttga 5393745  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 5442083 - 5442124
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaactt 80  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5442083 tgggagatatatagcctacgaagtaactcgtggagggaactt 5442124  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 5451093 - 5451134
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaactt 80  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5451093 tgggagatatatagcctacgaagtaactcgtggagggaactt 5451134  T

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Target: scaffold0054 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 40185 - 40122
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||    
T  40185 atgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttct 40122  T

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Target: scaffold0054; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 33834 - 33771
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 101  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||| ||||||    
T  33834 atgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttct 33771  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 16601 - 16545
Alignment:
Q  38 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 94  Q
    ||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||    
T  16601 atgggagatatatagcctaacaagtaactcgtggaggaaacttgacgttgacatgcc 16545  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 40548984 - 40549030
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgt 85  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  40548984 tgggagatttatagcctaagaagtaactcgtggaggaaacttgatgt 40549030  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 32642643 - 32642691
Alignment:
Q  39 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttg 87  Q
    ||||||||||||||  |||| |||||||| |||||| ||||||||||||    
T  32642643 tgggagatatatagtttaagaagtaactcttggagaaaacttgatgttg 32642691  T

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