View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_32 (Length: 413)
Name: NF3090_low_32
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 31867588 - 31867785
Alignment:
| Q |
98 |
gataatcttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatg |
197 |
Q |
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| T |
31867588 |
gataatgttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatatttttatttatatttgtaaaacattaaatg |
31867687 |
T |
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| Q |
198 |
actgcatatcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcagg |
295 |
Q |
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| T |
31867688 |
actgcatatcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattcagg |
31867785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 31858745 - 31858941
Alignment:
| Q |
98 |
gataatcttaatgggtatcatgttatcgagccaaatgtacaagcattagtattttgtttgatgattgatattttta---tttatatttgtaaaacattaa |
194 |
Q |
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| T |
31858745 |
gataatgttaacaggtatcatgttatcaagcccaatgtgcaagcattagtattttatttgatgattggtatttttattttttatattcgttaaacattaa |
31858844 |
T |
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| Q |
195 |
atgactgcatatcataaagttttaagaatctatatgatagatttggtttttgttacaagtacaattgaacttagtggagtttcctcatgatagcattca |
293 |
Q |
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| T |
31858845 |
atgactgcatatcataaa-ttttcagaatccatatgatagattt-gcttttgttgtaagtacaattgaacttagtggagtttcctcatgatagcattca |
31858941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 31867479 - 31867573
Alignment:
| Q |
13 |
aatatatgaacttaatatatcaaaagggggaaagaaatctacaacacatgtttgcttcatgtagctcgaaccaccattagtttaggataatctta |
107 |
Q |
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| T |
31867479 |
aatatatgaacttcatatatcaaaagggggaaataaatttacaacacatgtttgcttcatgtagctcgaaccaccattaatttaggataatctta |
31867573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 31858627 - 31858730
Alignment:
| Q |
4 |
atctccaagaatatatgaacttaatatatcaaaagggggaaagaaatctacaacacatgtttgcttcatgtagctcgaaccaccattagtttaggataat |
103 |
Q |
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| T |
31858627 |
atctccacgaatatatgcacttcatatatcaaacggaggaaagagatctacaacacatgtttccttcctgtagctcgaaccttcattattttgggataat |
31858726 |
T |
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| Q |
104 |
ctta |
107 |
Q |
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|||| |
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| T |
31858727 |
ctta |
31858730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 396
Target Start/End: Original strand, 31867845 - 31867887
Alignment:
| Q |
353 |
ggcatctaagcttaatctttgtctaatatttttatttaagtcct |
396 |
Q |
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| T |
31867845 |
ggcatctaagcttaatctttgtctaatattttt-tttaagtcct |
31867887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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