View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_35 (Length: 409)
Name: NF3090_low_35
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 34980669 - 34980322
Alignment:
| Q |
8 |
tgagatgaataccggtctcctgagggtgtttggagagcttcttctgatttggtttcttgggtacattattgctgtacatgtgaatggaaaactttgggac |
107 |
Q |
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| T |
34980669 |
tgagatgaataccggtctcctgagggtgtttggagagcttcttctgatttggtttcttgggtacattattgctgtacatgtgaatggaaaactttgggac |
34980570 |
T |
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| Q |
108 |
agatagaaaagagctcttgtggtggggcccgatcacttgaataggacctaaagaacccaattactgactacaccaataacgaggtataagtgttcgaatt |
207 |
Q |
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| T |
34980569 |
agatagaaaagagctcttgtggtggggcccgatcacttgaataggacctaaagaacccaattagtgactacaccaataacgaggtataagtgttcgaatt |
34980470 |
T |
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| Q |
208 |
tttgaccatcatcaaataatgcggaccacatctatacattacatacatatatactaataatattgtagcacattctggagggagtatataatcaatattg |
307 |
Q |
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| T |
34980469 |
tttgaccatcatcaaataatgcggaccacatctatacattacatacatatatactaataatattgtagcacattctggagggagtatataatcaatattg |
34980370 |
T |
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| Q |
308 |
aagctaaaaatattatattgtatgcataatggctgttcgatttaactg |
355 |
Q |
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| T |
34980369 |
aagctaaaaatattatattgcatgcatgatggctgttcgatttaactg |
34980322 |
T |
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