View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_36 (Length: 402)
Name: NF3090_low_36
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 1512711 - 1513103
Alignment:
| Q |
19 |
aacatccagaaaacgtaaagatgaagaaatgacaacatcagtcatgctgg---------------------atagattacttggttcatcgaaaactcca |
97 |
Q |
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| T |
1512711 |
aacatccagaaaacgtaaagatgaagaaatgacaacatcagtcatgctgggaagaataactcgttcaacggatagattacttcgttcatcgaaaactcca |
1512810 |
T |
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| Q |
98 |
cattccaagcttttcgcgttacaagatcagtcgcatagtaataagaagatgtagaaaaaagcggaaggttatgtggttgaagctgaattctctaagaagg |
197 |
Q |
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| T |
1512811 |
cattccaagcttttcgcgttacaagatcagtcgcatagtaagaagaagatgtagaa-----------gttatgtggttgaagctgaattctctaagaagg |
1512899 |
T |
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| Q |
198 |
ttgcagaatcttctacttaccaaagatatgaaacaattatcgctcaacattagtaaatattatacgaaacatcaaacattttttattataacaacatgct |
297 |
Q |
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| T |
1512900 |
ttgcagaatcttctacttaccaaagatatgaaacaattatcgctcaacattagtaaatattatacgaaacatcaaacaatttttattataacaacatgct |
1512999 |
T |
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| Q |
298 |
ataaattttcgatcat---ataataccaacatg------------ctcgcatgctcactcgcatacattttattcaatgactgtaaaaaagtgaatgaaa |
382 |
Q |
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| T |
1513000 |
ataaattttcgatcatataataataccaacatgcttgcacgcacactcgcatgctcactcgcacacattttattcaatgactgtaaaaaagtgaatgaaa |
1513099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 2218000 - 2217944
Alignment:
| Q |
330 |
cgcatgctcactcgcatacattttattcaatgactgtaaaaaagtgaatgaaaaaat |
386 |
Q |
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| T |
2218000 |
cgcacgctcattcgcacacaatatatttaatgactataaaaaagtgaatgaaaaaat |
2217944 |
T |
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