View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_37 (Length: 389)
Name: NF3090_low_37
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 16833035 - 16832835
Alignment:
| Q |
17 |
actattggtttcattctatttggaagccacttgtatatcattatcaaattaatattctgtcagtgtaaatttttattacaaggtcaatcaatcattaatc |
116 |
Q |
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| T |
16833035 |
actattggtttcattctatttggaagccacttgtatatcattatcaaattaatattctgtcagtgtaaatttttattacaaggtcaatcaatcattaatc |
16832936 |
T |
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| Q |
117 |
cctgctaaaggatcattcttgtgtcgttgagaagaaagttgatgcgataagaaaaggacttatatatagtttctatcccatgtttaacaaggcctctgac |
216 |
Q |
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| T |
16832935 |
cctgctaaaggatcattcttgtgtcgttgagaagaaagttgatgcgataagaaaaggatgtatatattgtttctatctcatgtttaacaaggcctctgac |
16832836 |
T |
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| Q |
217 |
c |
217 |
Q |
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| T |
16832835 |
c |
16832835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 16832771 - 16832674
Alignment:
| Q |
281 |
attctaatcacataaaaacttttgttatatgtattttagttgagtatttcccatgtactataagcataatgcataatcaaagactcgcattaattcat |
378 |
Q |
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| T |
16832771 |
attctaatcacataaaaacttttgttatatgtattttagttgagtatttcccaagtactataagcataatgcataatcaaagactcgcattaattcat |
16832674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 16573345 - 16573400
Alignment:
| Q |
300 |
ttttgttatatgtatttt-agttgagtatttcccatgtactataagcataatgcataa |
356 |
Q |
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| T |
16573345 |
ttttgttatatgtattttcagttgagtatttcccaagtac--taagcacaatgcataa |
16573400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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