View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_38 (Length: 387)
Name: NF3090_low_38
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 369
Target Start/End: Complemental strand, 25304116 - 25303751
Alignment:
| Q |
4 |
tagaggagaagcataggcaacccgatcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcaggaggaggccttttg |
103 |
Q |
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| T |
25304116 |
tagaggaaatgcataggcaacctaatcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcaggaggaggccttttg |
25304017 |
T |
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| Q |
104 |
gaaacaaagagctaagatgcactggttgaaacaaagggacgtgaatacaaggttcttttacatgtccactgtttcgagaggtaaagtcaagaaagttata |
203 |
Q |
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| T |
25304016 |
gaaacaaagagctaagatgcactggttgaaacaaagggacgtgaatagaaggttcttttacatgtccactgtttctagaggtaaagtcaagaaagttaca |
25303917 |
T |
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| Q |
204 |
aaactggtgtctgataatggttatttggttatgagataggagcacctatgtgatgtagcaaagaattattttgatgtggtttttgcggccaacaatggta |
303 |
Q |
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| T |
25303916 |
aaactggtgtttgataatggttatttggttatgagataggagcacctatgtgatgtagcaaataattattttgatgtggtttttgcagccaacaatggta |
25303817 |
T |
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| Q |
304 |
accatacgcatgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatg |
369 |
Q |
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| T |
25303816 |
accatacgcatgttcttgattttctaaagtgtgtgggttacccacgaatacaatgatatgcttatg |
25303751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 7124477 - 7124523
Alignment:
| Q |
87 |
caggaggaggccttttggaaacaaagagctaagatgcactggttgaa |
133 |
Q |
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| T |
7124477 |
caggaggaggcgttttggaagcaaagagcaaaaatgcactggttgaa |
7124523 |
T |
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