View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_40 (Length: 375)

Name: NF3090_low_40
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_40
NF3090_low_40
[»] chr6 (9 HSPs)
chr6 (15-322)||(16977693-16977998)
chr6 (34-81)||(16580239-16580286)
chr6 (34-81)||(16615094-16615141)
chr6 (219-305)||(16783385-16783471)
chr6 (257-322)||(16572090-16572155)
chr6 (34-81)||(16874099-16874146)
chr6 (239-322)||(16580052-16580135)
chr6 (239-322)||(16615245-16615328)
chr6 (239-322)||(16873913-16873995)
[»] chr2 (3 HSPs)
chr2 (198-322)||(21628765-21628892)
chr2 (257-322)||(32792500-32792565)
chr2 (38-82)||(21628995-21629039)
[»] scaffold0256 (2 HSPs)
scaffold0256 (20-81)||(11420-11481)
scaffold0256 (257-322)||(11601-11666)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 16977693 - 16977998
Alignment:
Q  15 atgaacatgcttccttcacacctttcctgaaagataagtaaataaagagttaattgttatgttaaatgtaactgatccaaatgatataaacatgtaatag 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||     
T  16977693 atgaacatgcttccttcacacctttcctaaaagataagtaaataaagagttaacttttattttaaatgtaactgatcaaaatgatataaacatgtaata- 16977791  T
Q  115 aaaaatagaaaaattacaatatacagaaaagacgtgactcaattgaatatgacgattcaaatgtcattcagcaacaaagtcgtaggttatcactttaact 214  Q
        ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||| |||||||    
T  16977792 ----atagaaaaattacaatatacacaaaagacgcgactcaattgaatatgacgatttaaatgtcattcagcagcaaagacataggttatcattttaact 16977887  T
Q  215 cat---gactgaagattagaagcatccaagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaa 311  Q
    | |   ||| ||||| ||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16977888 cttaacgaccgaagactagaagcatccaagacaaagtgatattgctagaagatacaaaaaatgaatctgcaaattttcaattttcaacaaatcatacaaa 16977987  T
Q  312 ggatttaggaa 322  Q
    |||||| ||||    
T  16977988 ggatttcggaa 16977998  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16580286 - 16580239
Alignment:
Q  34 acctttcctgaaagataagtaaataaagagttaattgttatgttaaat 81  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  16580286 acctttccggaaagataagtaaataaagagttaattgttatgttaaat 16580239  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 16615094 - 16615141
Alignment:
Q  34 acctttcctgaaagataagtaaataaagagttaattgttatgttaaat 81  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  16615094 acctttccggaaagataagtaaataaagagttaattgttatgttaaat 16615141  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 16783385 - 16783471
Alignment:
Q  219 actgaagattagaagcatccaagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatca 305  Q
    |||||| | ||||||||||||  ||||||| | | || ||| |||||||||||| |||||||||||||| ||||||||| |||||||    
T  16783385 actgaacaatagaagcatccataacaaagtaagattgttagcagatacaaaaaaggaatctgcaaatttacaattttcatcaaatca 16783471  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 16572155 - 16572090
Alignment:
Q  257 tagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||||| ||||||| ||||||| |||||| |||||||||||||| |||  ||||||||||||||    
T  16572155 tagaagatgcaaaaaatgaatctgtaaatttacaattttcaacaaagcatgtaaaggatttaggaa 16572090  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16874146 - 16874099
Alignment:
Q  34 acctttcctgaaagataagtaaataaagagttaattgttatgttaaat 81  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||||    
T  16874146 acctttccggaaagataagaaaataaagagttaattgttacgttaaat 16874099  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 16580135 - 16580052
Alignment:
Q  239 aagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||| ||||| | || |||||||| || |||| |||| || |||||| |||||||||||||| || | ||||||||||||||    
T  16580135 aagacagagtgagattgttagaagatgcataaaatgaatatgtaaatttacaattttcaacaaagcaaataaaggatttaggaa 16580052  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 16615245 - 16615328
Alignment:
Q  239 aagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||| ||||| | || |||||||| || |||| |||| || |||||| |||||||||||||| || | ||||||||||||||    
T  16615245 aagacagagtgagattgttagaagatgcataaaatgaatatgtaaatttacaattttcaacaaagcaaataaaggatttaggaa 16615328  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 16873995 - 16873913
Alignment:
Q  239 aagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||| ||||| | || |||| ||| ||||||| ||||||| |||||| ||||||||| |||| |||| ||||||||||||||    
T  16873995 aagacagagtgagattgttagatgatgcaaaaaatgaatctgtaaatttacaattttca-caaagcatataaaggatttaggaa 16873913  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 21628892 - 21628765
Alignment:
Q  198 aggttatcactttaactc--atgactgaagattagaagcatccaagacaaagtgatactggtagaagatacaaaaaacgaatctgcaaattttcaatttt 295  Q
    ||||||||| ||||||||  | |||| |||| ||||||||||||||||||||||| | || | ||||||| |||||| |||||| ||||||| |||| ||    
T  21628892 aggttatcattttaactctaacgacttaagactagaagcatccaagacaaagtgagattgctggaagatataaaaaatgaatctacaaatttacaatatt 21628793  T
Q  296 caacaaatcata-caaaggatttaggaa 322  Q
    ||||||||||||  ||||||||||||||    
T  21628792 caacaaatcatataaaaggatttaggaa 21628765  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 32792565 - 32792500
Alignment:
Q  257 tagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  32792565 tagaagatacaaaaaatgaatctgcaaatttacaatattcaacaaatcatataaaggatttaggaa 32792500  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 21629039 - 21628995
Alignment:
Q  38 ttcctgaaagataagtaaataaagagttaattgttatgttaaatg 82  Q
    ||||||||| ||||| ||| |||||||||||||| ||||||||||    
T  21629039 ttcctgaaatataaggaaaaaaagagttaattgtgatgttaaatg 21628995  T

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Target: scaffold0256 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 11420 - 11481
Alignment:
Q  20 catgcttccttcacacctttcctgaaagataagtaaataaagagttaattgttatgttaaat 81  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11420 catgcttctttccaacctttcctgaaagataagtaaataaagagttaattgttatgttaaat 11481  T

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Target: scaffold0256; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 11601 - 11666
Alignment:
Q  257 tagaagatacaaaaaacgaatctgcaaattttcaattttcaacaaatcatacaaaggatttaggaa 322  Q
    |||||||| | ||||| ||||||| |||||| ||||||||| |||| |||| ||||||||||||||    
T  11601 tagaagatgctaaaaatgaatctgtaaatttacaattttcatcaaagcatataaaggatttaggaa 11666  T

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